LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci4g1570	ATGGCGAAACTATCACAACCGAAGAATAATGCTGTCATCAGCAACAACAACCTCAGCGTCACTAACACTACGGTGCCCACCAAGGTTAAACGCACAAGGAGAAGTGTCCCCAGAGACTCTCCTCCTCAACGTAGCTCTATATACCGAGGAGTCACTAGGCACCGGTGGACTGGCCGGTATGAAGCTCACTTGTGGGACAAGAATTGTTGGAACGAGTCACAGAACAAAAAAGGGAGACAAGTATATCTGGGTGCTTATGACGATGAAGAAGCAGCAGCACATGCCTATGATCTAGCAGCATTGAAGTACTGGGGTCAAGATACAATTCTTAACTTTCCGTGGTCGACATACCTGAACGAACTGAAGGAAATGGAGGGTCAATCGAGGGAAGAGTATATTGGATCATTGAGGAGGAAAAGCAGTGGTTTTTCCCGGGGAGTTTCTAAATACAGAGGGGTTGCCAGACATCATCATAATGGAAGATGGGAAGCTCGGATTGGCAGAGTTTTTGGCAATAAATATCTCTATCTTGGAACTTATGCGACTCAAGAAGAAGCTGCCACGGCTTATGATATGGCGGCTATAGAATACCGTGGACTTAACGCCGTCACCAACTTCGATCTCAGCCGTTATATAAAGTGGCTTAAGCCTAATTCCATCGGCACCAATATTATTAATCCTAGTCATAAGTCTAACTCTGACCCTAACGGTAATGTCATTACCACCTTAACGACATCAAACCCTACCCAAGAGCATAGGTTCAGCTTCTTCCATCACAACCGCCAGCTTCAGGAACCGCCAGCTATTTATAACGGCGAACAAGAAGCCGAGCTGACTCATCGCCGACTGTCTCCGACAACCACTGCCACGTCAGCCTTAAGGCTTCTGCTTCAGTCGTCCAAGTTCAAGGAAATGATGGAGATGACATCCTCCGAGGATTTGTCGGTTCCTCCAGCTGCGAAGGTGCCGCTGCAATGCAGGTTTCCGGATGATATTCAGACGTACTTTGAGTGCGAGGACTTCAACAGTAATGGGGAAGGGGATGATCATATCATGTTCAGCGAGCTCAACTCCTACGTGCCTCCTCTGTTGTATGGTGACTTTGAAACCTGA	1113	0.4735	MAKLSQPKNNAVISNNNLSVTNTTVPTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQDTILNFPWSTYLNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNSIGTNIINPSHKSNSDPNGNVITTLTTSNPTQEHRFSFFHHNRQLQEPPAIYNGEQEAELTHRRLSPTTTATSALRLLLQSSKFKEMMEMTSSEDLSVPPAAKVPLQCRFPDDIQTYFECEDFNSNGEGDDHIMFSELNSYVPPLLYGDFET	370

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci4g1570	370	ProSiteProfiles	AP2/ERF domain profile.	149	207	IPR001471	GO:0003700\|GO:0006355
	Prci4g1570	370	FunFam	AP2-like ethylene-responsive transcription factor	46	115	-	-
	Prci4g1570	370	Pfam	AP2 domain	47	105	IPR001471	GO:0003700\|GO:0006355
	Prci4g1570	370	Pfam	AP2 domain	148	199	IPR001471	GO:0003700\|GO:0006355
	Prci4g1570	370	PRINTS	Ethylene responsive element binding protein signature	189	209	IPR001471	GO:0003700\|GO:0006355
	Prci4g1570	370	PRINTS	Ethylene responsive element binding protein signature	48	59	IPR001471	GO:0003700\|GO:0006355
	Prci4g1570	370	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	22	273	-	-
	Prci4g1570	370	SUPERFAMILY	DNA-binding domain	148	209	IPR016177	GO:0003677
	Prci4g1570	370	SUPERFAMILY	DNA-binding domain	46	115	IPR016177	GO:0003677
	Prci4g1570	370	MobiDBLite	consensus disorder prediction	1	46	-	-
	Prci4g1570	370	Gene3D	AP2/ERF domain	47	115	IPR036955	GO:0003700\|GO:0006355
	Prci4g1570	370	Gene3D	AP2/ERF domain	148	209	IPR036955	GO:0003700\|GO:0006355
	Prci4g1570	370	CDD	AP2	46	115	IPR001471	GO:0003700\|GO:0006355
	Prci4g1570	370	ProSiteProfiles	AP2/ERF domain profile.	47	113	IPR001471	GO:0003700\|GO:0006355
	Prci4g1570	370	CDD	AP2	148	209	IPR001471	GO:0003700\|GO:0006355
	Prci4g1570	370	FunFam	AP2-like ethylene-responsive transcription factor	148	209	-	-
	Prci4g1570	370	MobiDBLite	consensus disorder prediction	1	30	-	-
	Prci4g1570	370	SMART	rav1_2	47	119	IPR001471	GO:0003700\|GO:0006355
	Prci4g1570	370	SMART	rav1_2	149	213	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci4g1570	Prci-Chr4	13410035	13413697	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci4g1570	43	268	AP2-EREBP Transcription Factor Family	AT5G57390	56.846	1.41e-88	272

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-AP2	Prci4g1570		AP2	7.5e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci4g1570	K09285		-	gmx:100804555	491.5

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Prci4g1570	4	13410035	13413697	Prci9g1037	9	25070371	25073537	CCT
	Prci4g1570	4	13410035	13413697	Prci4g1570	4	13410035	13413697	ECH