Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1569 ATGGCGAAACTATCACAACCGAAGAATAATGCTGTCATCAGCAACAACAACCTCAGCGTCACTAACACTACGGTGCCCACCAAGGTTAAACGCACAAGGAGAAGTGTCCCCAGAGACTCTCCTCCTCAACGTAGCTCTATATACCGAGGAGTCACTAGGCACCGGTGGACTGGCCGGTATGAAGCTCACTTGTGGGACAAGAATTGTTGGAACGAGTCACAGAACAAAAAAGGGAGACAAGGTGCTTATGACGATGAAGAAGCAGCAGCACATGCCTATGATCTAGCAGCATTGAAGTACTGGGGTCAAGATACAATTCTTAACTTTCCGTGGTCGACATACCTGAACGAACTGAAGGAAATGGAGGGTCAATCGAGGGAAGAGTATATTGGATCATTGAGGAGGAAAAGCAGTGGTTTTTCCCGGGGAGTTTCTAAATACAGAGGGGTTGCCAGACATCATCATAATGGAAGATGGGAAGCTCGGATTGGCAGAGTTTTTGGCAATAAATATCTCTATCTTGGAACTTATGCGACTCAAGAAGAAGCTGCCACGGCTTATGATATGGCGGCTATAGAATACCGTGGACTTAACGCCGTCACCAACTTCGATCTCAGCCGTTATATAAAGTGGCTTAAGCCTAATTCCATCGGCACCAATATTATTAATCCTAGTCATAAGTCTAACTCTGACCCTAACGGTAATGTCATTACCACCTTAACGACATCAAACCCTACCCAAGAGCATAGGTTCAGCTTCTTCCATCACAACCGCCAGCTTCAGGAACCGCCAGCTATTTATAACGGCGAACAAGAAGCCGAGCTGACTCATCGCCGACTGTCTCCGACAACCACTGCCACGTCAGCCTTAAGGCTTCTGCTTCAGTCGTCCAAGTTCAAGGAAATGATGGAGATGACATCCTCCGAGGATTTGTCGGTTCCTCCAGCTGCGAAGGTGCCGCTGCAATGCAGGTTTCCGGATGATATTCAGACGTACTTTGAGTGCGAGGACTTCAACAGTAATGGGGAAGGGGATGATCATATCATGTTCAGCGAGCTCAACTCCTACGTGCCTCCTCTGTTGTATGGTGACTTTGAAACCTGA 1104 0.4746 MAKLSQPKNNAVISNNNLSVTNTTVPTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQDTILNFPWSTYLNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNSIGTNIINPSHKSNSDPNGNVITTLTTSNPTQEHRFSFFHHNRQLQEPPAIYNGEQEAELTHRRLSPTTTATSALRLLLQSSKFKEMMEMTSSEDLSVPPAAKVPLQCRFPDDIQTYFECEDFNSNGEGDDHIMFSELNSYVPPLLYGDFET 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1569 367 SMART rav1_2 146 210 IPR001471 GO:0003700|GO:0006355
Prci4g1569 367 SMART rav1_2 47 116 IPR001471 GO:0003700|GO:0006355
Prci4g1569 367 SUPERFAMILY DNA-binding domain 46 112 IPR016177 GO:0003677
Prci4g1569 367 ProSiteProfiles AP2/ERF domain profile. 47 110 IPR001471 GO:0003700|GO:0006355
Prci4g1569 367 ProSiteProfiles AP2/ERF domain profile. 146 204 IPR001471 GO:0003700|GO:0006355
Prci4g1569 367 SUPERFAMILY DNA-binding domain 145 206 IPR016177 GO:0003677
Prci4g1569 367 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Prci4g1569 367 PRINTS Ethylene responsive element binding protein signature 186 206 IPR001471 GO:0003700|GO:0006355
Prci4g1569 367 MobiDBLite consensus disorder prediction 1 46 - -
Prci4g1569 367 Pfam AP2 domain 47 102 IPR001471 GO:0003700|GO:0006355
Prci4g1569 367 Pfam AP2 domain 145 196 IPR001471 GO:0003700|GO:0006355
Prci4g1569 367 Gene3D AP2/ERF domain 145 206 IPR036955 GO:0003700|GO:0006355
Prci4g1569 367 Gene3D AP2/ERF domain 47 112 IPR036955 GO:0003700|GO:0006355
Prci4g1569 367 CDD AP2 145 206 IPR001471 GO:0003700|GO:0006355
Prci4g1569 367 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 22 270 - -
Prci4g1569 367 FunFam AP2-like ethylene-responsive transcription factor 46 112 - -
Prci4g1569 367 MobiDBLite consensus disorder prediction 1 30 - -
Prci4g1569 367 FunFam AP2-like ethylene-responsive transcription factor 145 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1569 Prci-Chr4 13410035 13413697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1569 43 265 AP2-EREBP Transcription Factor Family AT5G57390 55.602 4.01e-84 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Prci4g1569 AP2 3.6e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1569 K09285 - gmx:100804555 480.33