Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1561 ATGGCTTTCAATTCGGTCGTTCTGCTTCTTCTCTTCTTCCTCTCCTGCGCTGGACTTTGTTTCTCTTCCGAGCCTCGCAACCACGAAGTGGAGGCTTTGATGAGCATAAAGAATGCTCTGACTGACCCGCATGGAGTTTTAAGCAACTGGGATGAGTACTCTGTGGACCCTTGCAGTTGGGCTATGATCACATGTTCTCCTGATTCCCTTGTCATAGGCCTGGGAGCTCCTAGCCAATCTCTTTCAGGAACTCTATCAGGAGCAATCGCAAATCTGACAAATCTTCGTTTACTGCAGAACAACAATATCTCCGGCAAAATCCCACAGGAGCTTGGTAACCTTGCAAAGCTTCAGACTCTTGATCTTTCCAATAATCGATTCTCTGGGCCCATTCCAGTGTCTTTGAGTTGGTTGAATAATCTCCAGTACCTGAGGCTGAACAACAACAGTCTGTCTGGGCCATTTCCTGTATCACTGTCCAAAATCCCACAGCTTTCTTTCTTGGACTTGTCTTACAACAATCTCAGCGGACCATTACCCAAGTCTCCGGCCAGAACATTCAACGTTATTGGAAACCCCTTAATTTGTGGAAGCAGTTCTACTGAAGGCTGCTATAGATCAGCAACCCTCACACCTGTTCCTTTCACTCTAATATTGTCACGAGGAAATCACAAGTCCGAGAAGCTTGCAATTGCACTTGGGGTCAGTCTCAGCTTTGCTAGCATCATACTTGTGTCTTTTGGGATCTTTTGGTACAGGAAGAGACGGCAGAGCAAAGCCATTCTGTACCTCAATGATTATCAAGAAGCGGGACTTGTTAGCTTGGGAAATCTCAAAAATTTTACTTTCAGAGAGCTCCAACATGCAACAGACAATTTCAGCTCCAGGAACATACTTGGAGCAGGAGGTTTTGGCAATGTTTATCGGGGGAGGCTTGGAGATGGGACAATGGTGGCAGTGAAAAGGCTGCATGATGTATGTGGAATTGCTGGTGAATCACAGTTTCAAACAGAACTGGAGATGATCAGCTTGGCAGTTCACCGTAATTTACTTCGCTTGATAGGATTTTGTGCCATTCCTAATGAAAAGCTTCTGGTTTACCCTTATATGTCTAACGGTAGTGTGGCTTCCAGGCTCAGAGGCAAACCTTCTTTGGACTGGAACACAAGAAAGAGGATTGCCATTGGAGCTGCTAGAGGTCTTCTGTATCTTCATGAACAATGCGATCCGAAGATAATACACAGAGATGTAAAGGCTGCTAATGTGCTTCTAGATGACTATTTTGAGGCTGTTGTTGGTGATTTTGGGCTTGCAAAGCTCCTTGACCATGCTGACTCTCATGTCACAACTGCTGTCCGTGGCACTGTTGGCCACATTGCACCAGAATATCTTTCCACTGGCCAATCTTCTGAGAAAACTGATGTATTTGGATTTGGCATTCTCTTGTTGGAGCTTATAACTGGAATGACAGCCCTTGAGTTTGGGAAAACAGTTAATCAAAAGGGTGCTATCCTAGAGTGGGTCAAGAAAATACAACAAGAAAAGAAACTTGAAGTATTGGTGGACAAAGAGTTAGGTAGTCACTATGACTGGATAGAGGTGGGGGAAATGTTACAAGTAGCTTTACTCTGCACTCAATATTTGCCGGCCCACCGCCCTAAAATGTCTGAAGTGGTCCGGATGCTCGAAGGCGATGGCCTTGCTGAGAAATGGGCAGCATCACATAATCATGGTAGCCTTAGCATGAGCTCCTTTCACAGCAACAGTAGCAACAGCTCATCATTCCGCCCGACCACCAACCCATCAAATTCAAAACACCATGACAATGTTCATGATCGTTCCTACATGTTTGGCATGGCCGTGGATGACGACGACGACGGACGTTCTTTGGATTCCGATGCCATGGAACTCTCTGGTCCAAGATGA 1926 0.4559 MAFNSVVLLLLFFLSCAGLCFSSEPRNHEVEALMSIKNALTDPHGVLSNWDEYSVDPCSWAMITCSPDSLVIGLGAPSQSLSGTLSGAIANLTNLRLLQNNNISGKIPQELGNLAKLQTLDLSNNRFSGPIPVSLSWLNNLQYLRLNNNSLSGPFPVSLSKIPQLSFLDLSYNNLSGPLPKSPARTFNVIGNPLICGSSSTEGCYRSATLTPVPFTLILSRGNHKSEKLAIALGVSLSFASIILVSFGIFWYRKRRQSKAILYLNDYQEAGLVSLGNLKNFTFRELQHATDNFSSRNILGAGGFGNVYRGRLGDGTMVAVKRLHDVCGIAGESQFQTELEMISLAVHRNLLRLIGFCAIPNEKLLVYPYMSNGSVASRLRGKPSLDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYFEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAILEWVKKIQQEKKLEVLVDKELGSHYDWIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLAEKWAASHNHGSLSMSSFHSNSSNSSSFRPTTNPSNSKHHDNVHDRSYMFGMAVDDDDDGRSLDSDAMELSGPR 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1561 641 FunFam Somatic embryogenesis receptor kinase 1 263 369 - -
Prci4g1561 641 SUPERFAMILY Protein kinase-like (PK-like) 276 563 IPR011009 -
Prci4g1561 641 MobiDBLite consensus disorder prediction 605 625 - -
Prci4g1561 641 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Prci4g1561 641 Gene3D Transferase(Phosphotransferase) domain 1 370 581 - -
Prci4g1561 641 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Prci4g1561 641 Pfam Protein tyrosine and serine/threonine kinase 296 562 IPR001245 GO:0004672|GO:0006468
Prci4g1561 641 PRINTS Leucine-rich repeat signature 117 130 - -
Prci4g1561 641 PRINTS Leucine-rich repeat signature 162 175 - -
Prci4g1561 641 SMART serkin_6 293 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci4g1561 641 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 573 - -
Prci4g1561 641 SUPERFAMILY L domain-like 26 189 - -
Prci4g1561 641 Gene3D Phosphorylase Kinase; domain 1 264 369 - -
Prci4g1561 641 ProSiteProfiles Protein kinase domain profile. 293 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci4g1561 641 MobiDBLite consensus disorder prediction 582 641 - -
Prci4g1561 641 FunFam Putative LRR receptor-like serine/threonine-protein kinase 26 206 - -
Prci4g1561 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Prci4g1561 641 FunFam Somatic embryogenesis receptor-like kinase 1 370 582 - -
Prci4g1561 641 Gene3D Ribonuclease Inhibitor 26 206 IPR032675 -
Prci4g1561 641 MobiDBLite consensus disorder prediction 582 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1561 Prci-Chr4 13092957 13098764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1561 8 641 Receptor kinase-like Gene Family AT5G16000 63.665 0.0 785
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Prci4g1561 PK_Tyr_Ser-Thr 9.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1561 - - gmx:100797186 969.533