Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1536 ATGGGTAGACGGAGAACTTTAGACGAAGTAAAAGGCCAAGCCTTTGAGCCTCCTTCTTCACCACCACCATCGTACTATCTTTCTCAGCCGCGTCTCCCATCTTCTTCACCGCCCAATTTCGGATCTCATGATGGTTTCTTCAATTTAAACGACAAGGTGAGTCCGAGTATGCTGCTTGTCATCATAATTCTGGCAATTGTTTTCTTCATTTCTGGGTTGATTCACCTGCTCGTTAGATTCCTGTGGAGACCTCAACCCAGAGACCCAGAGGATTCGGACAATGTGTCTGCTCTTCAAGGTCAATTGCTGCAACTGTTTCACCTTCATGATGCTGGCGTTGACCAGTCCTTCATTGATAACACCCTCCCTGTGTTCCATTACAAAGCCATCATAGGATTGAAGGACCCATTTGATTGTGCTGTGTGCTTGTGTGAATTTGAAGCTGATGATAAGCTCAGATTGTTACCCAAATGTAGCCACGCCTTTCACATGGAGTGCATAGATACTTGGCTCTTGTCTCACTCAACTTGTCCTCTCTGCAGAGCTAGCTTGATTTCTGATTTCTCCCCCACCAATACATGTTCCTCTCCTTTTGTCTTCGTTCTAGAATCTGGGAGTGAGAGTTCCAGAGAGATTGTTCCAGAAAGAGAGAGTACAGTTGGTAGGACCAGTTCTGTGGTTGAAGACAACGAACTTGGGTTGACCCATATAGATTTGTCACACAAATCTGTTGATTTAAGTTCAGATGCTAATCCTTGCCAGACTAAAGCTGGGGAATCACATGAGAAAGTGGTCAATGTGAAGCTGGGAAAGTTCAGGAATGTGGACTGTGTTGGTGAAGGAAGCAGTACAGACATGGGAGAAGCTAGAAGGTGTGTTTCTATGGGGTCATTTGCTTATGTCATGGACGAGAATTCTTCACTTCAGGTACCAGTAAGAGCGACTTTGAAGAAGCAGTCAAGTAAGAAACCTGCTTTACCATTAACACCAGGACGCAGGATCGCCATGTCAGAGTGTGACTGTGAGTCCACGAGAGATTTCAGGTTCACAGGTTTTGACGCAGCCAAAGGTATTGAGAGTTCTGCTGAGACTGGAAGTATCGAGAGAAGCAGAAAAGAGAGCTTTTCGGTTTCAAAGATTTGGCTTCGAGGAAAGAGAGAGAAGCCACATGATGCTGTGGCTGATTCGTCAAGGAGGGCTGTTTCGTTTCGATTCTCAGCACAAAGTAACGAGGTTGCGAGGGATGATTCGAAGGAAAGGAATGGGAAATCTGAGATTGAGATTGCGATGGAAAATGATGAGGAAAATCAGAGCTGTTACAGTGTGGATTCTCAGGGCAGAGCACCCTCATTTGCCAGAAGAACTCTGCTGTGGCTTACTGGAAAACAGAACAAGGTTGTTCATTCATCTTCTGATTCAAACTTCTAG 1428 0.4517 MGRRRTLDEVKGQAFEPPSSPPPSYYLSQPRLPSSSPPNFGSHDGFFNLNDKVSPSMLLVIIILAIVFFISGLIHLLVRFLWRPQPRDPEDSDNVSALQGQLLQLFHLHDAGVDQSFIDNTLPVFHYKAIIGLKDPFDCAVCLCEFEADDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLISDFSPTNTCSSPFVFVLESGSESSREIVPERESTVGRTSSVVEDNELGLTHIDLSHKSVDLSSDANPCQTKAGESHEKVVNVKLGKFRNVDCVGEGSSTDMGEARRCVSMGSFAYVMDENSSLQVPVRATLKKQSSKKPALPLTPGRRIAMSECDCESTRDFRFTGFDAAKGIESSAETGSIERSRKESFSVSKIWLRGKREKPHDAVADSSRRAVSFRFSAQSNEVARDDSKERNGKSEIEIAMENDEENQSCYSVDSQGRAPSFARRTLLWLTGKQNKVVHSSSDSNF 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1536 475 CDD RING-H2_EL5-like 138 181 - -
Prci4g1536 475 FunFam E3 ubiquitin-protein ligase ATL6 103 187 - -
Prci4g1536 475 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 50 381 - -
Prci4g1536 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 186 IPR013083 -
Prci4g1536 475 SMART ring_2 139 180 IPR001841 -
Prci4g1536 475 SUPERFAMILY RING/U-box 120 189 - -
Prci4g1536 475 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Prci4g1536 475 Pfam Ring finger domain 138 181 IPR001841 -
Prci4g1536 475 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1536 Prci-Chr4 12781778 12783546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1536 42 471 C3H Transcription Factor Family AT2G18650 48.546 2.85e-105 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1536 - - qsa:O6P43_022263 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g1536 4 12781778 12783546 Prci4g1536 4 12781778 12783546 ECH