Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1534 ATGGCTCTCAAAATGAACGCAGTGTTAGTAATGGGGCTAGCCATCTTGAGCTTTGTCTCAGTGGCTTCTGCTACAGCTGGAACCGCCACCTTTTACACTGTATATGTTCCATCGGCATGCTATGGATATCAAGATCAAGGAACTATGATAGCAGCAGCAAGCGACTCAATCTGGAACAACGGAGCTGCATGTGGCAAAATGTACAGGATCACATGCACCAGCGGCACCAACAGTGTGCCTCAGCCGTGCAAAGGCGGAAGCGTCACCGTCAAGATCGTCGATCGCTGCCCTTCTCCGGGATGCCAAGCCACCATCGATCTCTCTCAGGAAGCTTTCTCTGTCATTGCTAACCCTGACGCCGGAAAAGTCAACATCGACTATGTCCAGGTCTAA 393 0.5089 MALKMNAVLVMGLAILSFVSVASATAGTATFYTVYVPSACYGYQDQGTMIAAASDSIWNNGAACGKMYRITCTSGTNSVPQPCKGGSVTVKIVDRCPSPGCQATIDLSQEAFSVIANPDAGKVNIDYVQV 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1534 130 Pfam Lytic transglycolase 51 127 IPR009009 -
Prci4g1534 130 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 27 130 IPR007112 -
Prci4g1534 130 FunFam Barwin-related endoglucanase 24 129 - -
Prci4g1534 130 CDD DPBB_EG45-like 25 128 - -
Prci4g1534 130 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 1-RELATED 3 129 IPR044206 GO:0009627|GO:0048046
Prci4g1534 130 Gene3D - 17 130 IPR036908 -
Prci4g1534 130 SMART dpbb_1 50 127 IPR007112 -
Prci4g1534 130 SUPERFAMILY Barwin-like endoglucanases 14 130 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1534 Prci-Chr4 12761512 12762657 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1534 4 130 Expansin Gene Family AT4G01630 34.416 1.83e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1534 - - aew:130796557 198.364