LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci4g1519	ATGGTGCTTGCTTCTTCCCCTAGTAAAATACTAATTGGTCTGTCGTTAGACCGTGATGATAGCAGAGAACTTCTCTCATGGGCTGTTAGAGTTCTAGCCAATCCGAATGACACCATTGTCGCACTCCATGTACTTGTTTCTAAGGATAAGAAGAAAAGGAAGAAGAAGCGTGCTTCAATGACAAGAAGGCAGTCACAACTTCGGCAGGCTAAAGCCTGTGTCATATCTGTGCTTGGTGAATTTGCAAAGGCTTGTTGGTCTAAGCAGGTGAATCTGGAAGCCAAAGTGGCATTCAGTTCCAATGTAGGTGAAGGTTTAGTTGAAGAAGCCAAGTCCATATCTGCTGAATTTCTTCTTCTTCGTGGTTCTAGAAACCAGTCTAGCAAGAATCAGGCATGTAATGGAATTACCAAGTATTGCTTTCAGAATGTCCACGAAAGCTGCACCATTGTCTCTGTTGGGAAAAGCTCAAAAGCCAGTTTTACAAGCCCCGAAGCAGATAATTATGAATCAAGCTCAGGGTGGTTTAAGGAGGATAAACAAAGTGACAGACGAGAATCCCCTGTTTTGAATGCTTTTATCTCAGACTCTAGGACTCAAACACGTTCACCAAGAACAGTATTGGACGCATTTGAGGGTCAATCTAACAGCACAGAAGATGACACCTTCAGTACAAGGGTCTCAAGCATCACGGACACTCCATCAATGGCTTCGAAAATGAAAAGCAAATCCAATTTTAGGAAACCACAGTCCCCATTCAGACTCATAGCCTCACTGCTTGCCTCACCATTAAGAAGGAAAAACTCCAAAAAGTCCCAAAATGAAAAGAGACAACCTTTGTTAAAATGCTTCAGCTATGAGGAGATCTCCACCGCCACAAATGGCTTCCATCAAGATAATTTGGTGGGACGTGGTGGATACTCTGAAGTATACAGAGGAGATCTTTCTGATGGACAAAGCATTGCAGTGAAAAGGTTGTCTAAGGACAAAAAGGACGCGAACAAGGAAAAGGAGTTCCTCATGGAATTAGGAGTGATTGGACATGTCTGTCATCCTAATACTACATCTTTAGTCGGATGCTGCATTGAAAATGGACTCTACCTGGTTTTCAAGTACTCTCAAAATGGAAACTTAGCCACTGCATTGCATGGTAAATCAGGAACGTCACTTGACTGGGCAGTGAGATACAAAGTTGCCATTGGAGTAGCGAGGGGACTGCATTATCTTCACAAGTGCTGCAAACGCAGAATAATACATCGCGACATTAAAGCCTCCAACGTGCTTCTGGGTCCAGATTATGAACCACAGATTACTGATTTTGGGCTGGCAAAGTGGCTTCCGAACAAATGGACTCACCACGCTGTAATACCAGTGGAAGGCACGTTCGGGTACTTGGCACCAGAGTCCTTCATGCATGGAATAGTGGATGAGAAAACTGATGTTTTTGCTTTTGGGATTCTTCTTCTGGAGATTGTAACTGGAAGAAGACCTGTTGATTCCAAGAAACAGAACCTTCTCCTTTGGGCAAAGCCTCTGATGGAATCAGGGAACATCAGGGAGCTAGCTGATCCGAGAATGGAAGGAGCATATGATGAAGAGGAATTGAACAGAGTAGTGCTCACAGCTTCATACTGTGTGAGACAATCTCCCCTTTGGCGTCCCCAAATGAGCGAGGTATTGGAACTGCTGAGCAGTGGGGAAGATAGTGAGGCTGGGAAGAGCTGGAGGATCCCAAAGTTGACAACATCTGAATCTGATGAACTGGATGATTACTCGATGGCTTTCGGATATGAAGTGCCTTCTGACATATATCTGGAGGAGTTTTTGTGA	1830	0.441	MVLASSPSKILIGLSLDRDDSRELLSWAVRVLANPNDTIVALHVLVSKDKKKRKKKRASMTRRQSQLRQAKACVISVLGEFAKACWSKQVNLEAKVAFSSNVGEGLVEEAKSISAEFLLLRGSRNQSSKNQACNGITKYCFQNVHESCTIVSVGKSSKASFTSPEADNYESSSGWFKEDKQSDRRESPVLNAFISDSRTQTRSPRTVLDAFEGQSNSTEDDTFSTRVSSITDTPSMASKMKSKSNFRKPQSPFRLIASLLASPLRRKNSKKSQNEKRQPLLKCFSYEEISTATNGFHQDNLVGRGGYSEVYRGDLSDGQSIAVKRLSKDKKDANKEKEFLMELGVIGHVCHPNTTSLVGCCIENGLYLVFKYSQNGNLATALHGKSGTSLDWAVRYKVAIGVARGLHYLHKCCKRRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPESFMHGIVDEKTDVFAFGILLLEIVTGRRPVDSKKQNLLLWAKPLMESGNIRELADPRMEGAYDEEELNRVVLTASYCVRQSPLWRPQMSEVLELLSSGEDSEAGKSWRIPKLTTSESDELDDYSMAFGYEVPSDIYLEEFL	609

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci4g1519	609	FunFam	Putative receptor-like serine/threonine-protein kinase	263	372	-	-
	Prci4g1519	609	Pfam	Protein tyrosine and serine/threonine kinase	298	562	IPR001245	GO:0004672\|GO:0006468
	Prci4g1519	609	PANTHER	OS08G0249100 PROTEIN	51	591	IPR046958	-
	Prci4g1519	609	SMART	serkin_6	296	563	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci4g1519	609	FunFam	Probable receptor-like serine/threonine-protein kinase At5g57670	373	577	-	-
	Prci4g1519	609	Pfam	Universal stress protein family	9	151	IPR006016	-
	Prci4g1519	609	ProSitePatterns	Protein kinases ATP-binding region signature.	302	324	IPR017441	GO:0005524
	Prci4g1519	609	Coils	Coil	323	343	-	-
	Prci4g1519	609	MobiDBLite	consensus disorder prediction	172	186	-	-
	Prci4g1519	609	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	417	429	IPR008271	GO:0004672\|GO:0006468
	Prci4g1519	609	ProSiteProfiles	Protein kinase domain profile.	296	576	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci4g1519	609	CDD	USP_Like	9	124	-	-
	Prci4g1519	609	Gene3D	Transferase(Phosphotransferase) domain 1	374	579	-	-
	Prci4g1519	609	MobiDBLite	consensus disorder prediction	159	229	-	-
	Prci4g1519	609	Gene3D	HUPs	3	152	IPR014729	-
	Prci4g1519	609	Gene3D	Phosphorylase Kinase; domain 1	257	372	-	-
	Prci4g1519	609	MobiDBLite	consensus disorder prediction	192	229	-	-
	Prci4g1519	609	SUPERFAMILY	Protein kinase-like (PK-like)	272	563	IPR011009	-
	Prci4g1519	609	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	7	149	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci4g1519	Prci-Chr4	12544894	12548623	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci4g1519	284	602	Trihelix Transcription Factor Family	AT1G70460	40.719	1.26e-73	248

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Prci4g1519		PK_Tyr_Ser-Thr	1.8e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci4g1519	-		-	pcin:129309776	1196.8