Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1517 ATGGGAATTGAGAGAGGAGGCCTCAAGGGCTTACGTGGAGGGTGGAGCGTGGCGGCTAAGCCATGCGACTCCTGCAAGTCGGAGGCCTCCGCCGTGTTCTGCCGCGCCGATTCCGCCTTCCTCTGCATGGCCTGTGACACCCGAATTCACTGCGGTGATAAGCTCGCTTGCCGCCACGAGCGTGTTTGGATGTGTGAAGTGTGCGAGCACGCACCTGCTTCGGTGACGTGCAAGGCCGACGCCGCCGCTCTCTGCGTCACCTGCGATTCTGACATCCACTCCGCCAACCCACTCGCTCGCCGCCACGAGCGGGTCCCGGTGGAGCCCTTTTATGACTCCGCTGAGTTGGTGGCCAAGTCCTCTGCTGCCGTTGCTGGTTTTAACTTCTTCGTCCCGAGCGATAACGGAATTTGCTCCGATGGTTTCCAAGCCGACGATCCCGAACCAGTGCCGTGGATGGTTCCCAACCAGAATTTCACCTCCAAGGTCGTGGGAGCTCCTGAGGTCAAGTCCGGCGACATGTTCTTCACAGAAATGGATCCGTTTATGGATTTCAATTACTCCAATTCTTATCAGAATAACAATAACCACAGCACGGCAAACGACAGCGTTGTCCCAGTTCAAACCAAGCCTGTTTCGGCTCCGATGATCAACCACTCGGAGGGTTGCTTCGATATTGATTTTTGCAGATCAAAGCTTTCTTCTTTTAGCTACCCAAGCCAAAGTGTTTCATCGTCTTCAGTCGATGTTGGGGTTGTACCAGACTCCGTGTCAGAAATGTCGTTCTCGTTGGGCAGAAACATGAGCAGCAGCTCCGAATCGGGCGGAATCGGGTCGTCGGGTAACAACCAGGCTACCCAACTGGGCGGGATGGACCGGGAAGCGAGGGTGTTAAGGTACAGAGAGAAAAGGAAGAACCGCAAGTTCGAGAAAACCATCCGGTATGCTTCGAGGAAAGCATACGCGGAGACCCGGCCCAGGATCAAGGGGCGGTTCGCAAAACGGGGCGAAACCGAGTCGGAGGTAGACCGGGTGTACAGCCCTGTCAGCACGGGGGGTCTCTTGATGGATTCTCAGTACGGCGTCGTACCGTCGTTCTAA 1101 0.5604 MGIERGGLKGLRGGWSVAAKPCDSCKSEASAVFCRADSAFLCMACDTRIHCGDKLACRHERVWMCEVCEHAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFYDSAELVAKSSAAVAGFNFFVPSDNGICSDGFQADDPEPVPWMVPNQNFTSKVVGAPEVKSGDMFFTEMDPFMDFNYSNSYQNNNNHSTANDSVVPVQTKPVSAPMINHSEGCFDIDFCRSKLSSFSYPSQSVSSSSVDVGVVPDSVSEMSFSLGRNMSSSSESGGIGSSGNNQATQLGGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRGETESEVDRVYSPVSTGGLLMDSQYGVVPSF 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1517 366 CDD Bbox1_BBX-like 65 107 - -
Prci4g1517 366 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Prci4g1517 366 CDD Bbox1_BBX-like 21 64 - -
Prci4g1517 366 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 347 IPR045281 GO:0009909
Prci4g1517 366 SMART bboxneu5 65 107 IPR000315 GO:0008270
Prci4g1517 366 SMART bboxneu5 17 64 IPR000315 GO:0008270
Prci4g1517 366 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Prci4g1517 366 ProSiteProfiles CCT domain profile. 293 335 IPR010402 GO:0005515
Prci4g1517 366 MobiDBLite consensus disorder prediction 263 289 - -
Prci4g1517 366 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Prci4g1517 366 MobiDBLite consensus disorder prediction 263 293 - -
Prci4g1517 366 Pfam CCT motif 293 335 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1517 Prci-Chr4 12528398 12530024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1517 1 366 C2C2-CO-like Transcription Factor Family AT5G57660 54.111 2.33e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Prci4g1517 zf-B_box 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1517 - - cam:101510742 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g1517 4 12528398 12530024 Prci4g1517 4 12528398 12530024 ECH