Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1492 ATGGGTCGAGCTCCATGTTGTGACAAGGCTAACGTCAAGAAAGGACCTTGGTCCCCCGAAGAAGATGCTAAACTCAAAGCCTACATCGAGAAGTATGGAACTGGAGGCAACTGGATTGCTCTTCCCCAAAAAATCGGTCTCAAGAGATGTGGAAAGAGTTGCAGACTTAGATGGTTAAATTATCTGAGGCCTAATATCAAGCATGGTGGGTTTACAGAAGAAGAAGACAACATCATCTGTAGCCTTTACATTAGCATCGGAAGCAGGTGGTCCATAATCGCAGCACAGCTACCGGGAAGGACAGACAATGACATAAAGAACTACTGGAACACCAGATTGAAGAAGAAGTTACTGGGAAGAAGAAAACAATCTTCTGCTGGCTTCAATAATAATCCAAAAGCCAGAAATGGATCATCAGGAAATTACGAACAAGATGATTCAAATGCCCTAAGCAACTCGGCTCTCGAACGTCTTCAACTTCATATGCAGCTTCAAAGCCTCCAAAACCAAAACCCTTTATTCTCTAATTTCTTCAACAATCCTGCACTCTGGCCCACCACCAAGCTTCATCCTCCAATCATGACTGGTATTGCCTCTGATGATGGTAATAATCATAAAAACCCTGACCAGTCACAAAAAGATGATCATTTCTACAAACCATCTGTTCCATCTAGTACTGATGGTACCTCTCTTCAACAAGAACATGAAAAGATCACAAGTTCTTCTCAGATTGACATGTCGGTTCCTTTCATGCGGGTTGATCCAATGGACTCTAATGGTGTGGCAACAGTAAGACTTGAAGACGGAGTTCATCGTCAGCAAACTAATATGGGGAATCTGCAGCAAGTTTCTGCGCTTCAGGCTGAGCTGCATGAGATTCTCAGCAATAATAGCATATCAATGAGTTACAATATGGCACAGGCTGATCAAGATCAGATGGCCGATTTTGATTGTTTTGCAGAAATGAATTCAACTGATGATTCGAGGGACAACATGATGAATATGTGGTGGTCCAATGATTTAGGGGCCAAATCAGCATCTTCCGGCTCTTGGGGATCAAGTACAAGCACAAGTACTCCTGTTCTTCAGCCAGAAGGGATGTTTCAAGATAGTTATGAACTGGTGGGTTATAGTTTGTAG 1140 0.4272 MGRAPCCDKANVKKGPWSPEEDAKLKAYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSSAGFNNNPKARNGSSGNYEQDDSNALSNSALERLQLHMQLQSLQNQNPLFSNFFNNPALWPTTKLHPPIMTGIASDDGNNHKNPDQSQKDDHFYKPSVPSSTDGTSLQQEHEKITSSSQIDMSVPFMRVDPMDSNGVATVRLEDGVHRQQTNMGNLQQVSALQAELHEILSNNSISMSYNMAQADQDQMADFDCFAEMNSTDDSRDNMMNMWWSNDLGAKSASSGSWGSSTSTSTPVLQPEGMFQDSYELVGYSL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1492 379 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Prci4g1492 379 CDD SANT 71 113 IPR001005 -
Prci4g1492 379 FunFam Transcription factor MYB36 70 139 - -
Prci4g1492 379 SMART sant 67 115 IPR001005 -
Prci4g1492 379 SMART sant 13 64 IPR001005 -
Prci4g1492 379 FunFam Transcription factor RAX3 7 68 - -
Prci4g1492 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Prci4g1492 379 MobiDBLite consensus disorder prediction 123 148 - -
Prci4g1492 379 MobiDBLite consensus disorder prediction 120 148 - -
Prci4g1492 379 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Prci4g1492 379 PANTHER OS09G0431300 PROTEIN 1 351 - -
Prci4g1492 379 Gene3D - 70 142 - -
Prci4g1492 379 CDD SANT 16 62 IPR001005 -
Prci4g1492 379 MobiDBLite consensus disorder prediction 217 241 - -
Prci4g1492 379 Gene3D - 7 68 - -
Prci4g1492 379 MobiDBLite consensus disorder prediction 194 241 - -
Prci4g1492 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Prci4g1492 379 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Prci4g1492 379 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Prci4g1492 379 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1492 Prci-Chr4 12330537 12332165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1492 1 349 MYB Transcription Factor Family AT5G57620 50.140 1.25e-95 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci4g1492 Myb_DNA-binding 4.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1492 K09422 - gmx:778083 376.711