Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1478 ATGGATACAGATGAGGAGTTGTCAATTGTTCTCGAACTATCTAAAGATGACATTTTCTATGATAAAAAGGAGAAATTACTACAAAGTAAAGGTTTTAGTGCCAAGGAAGTAGTGTGTCTCCGGAGCTTTTCAGAGCCAGGTTGTATGAGTGATACTGTGAAAGTACTGGTTCAGATTGCAAGAATCATACATTTGAATGAGGTGGAACTTTATTTTGCTGATGATGCAAGTACATTAGGGGAATTTTACAGCCCTAGGAATGAGTTAGAGGCTCTCAATTCCATCATTTCCCTCATTGACACATTACTTTCTAGTTGTAAGCATCCTCACACAAATTTACTGCGAGAGTTGCGGACAACAATTCTTGCCTTAATTTCTGATTTTGGGGGCAAGGACAGTTTGGAAGCAAAGGTCGAAAAAGACCACAGATGTGAACAAGAAGAACAACTCTTAGAATGGGGTAAAAGCAATGGCATAAAGACACAATTATGGATAGCATATGTCAAAGGAGCAGGTCGAGGTGGCATAGCAGAAAAGGATCTTAAAGTTGGAGATATTGCTCTAGAAATTCCAGTATCCATTATCATTAATGAGGAGCTTGTGCATGAAACTGATATGTACTGTGCCCTAAAGGAAGTTGATGGCATATCACCTGAGACAATATTGCTATTATGGAGCATGAAAGAGAGGCACAATCAGGATTCAAGATTCAGAGCTTACTTTGACTCGCTCCCAGAAAACTTTAATACTGGGTTGAGCTTTGGTATTGATGCAATCACAACATCAGAAGGAACCTTGCTCTTGGAAGAGATAATGGAAGCAAGACAGCATCTTCATGCTCAGTATGATCAATTATTCCCTACTCTGTGCAATGCTTTTCCTGATATATTTCCACTAAAGCTGTACACGTGGGAGCAATTTCTATGGGCCTGTGAACTCTGGTACTCAAATAGTATGAAGATAATGTTTTCTGATGGGACTTTAAGGACGTGCTTAATTCCTATTGCTGGATTTCTTAATCATTCGTTGTGCCCACACATTCTGCACTATGGCAAAGTAGATCCTGCAACAAATTCATTGAAATTTCCTCTTTCAAGACCATGCAGATCTGGAGAAGAATGCTGTTTAAGCTATGGGAACTTCTCTAATTCTCATCTCATTACCTTTTATGGTTTCTTACCACAAGGAGACAACCCATATGACGTCATCCCACTTGACATTGATGCTTCTGGCGTTGGCTCCTTGGAGGATGAACCCGTTTCCAGCTGGAGCAATCACATGGTGCGGGGTACTTGGCTCTCCAACAACCACAATTTGTACTACTATGGCCTCCCCTCCCCGCTGTTGGACCATTTTCGAAGATGTCGAAATCCCATGTTGCATACAAAGACCTTTTTGCAAGGGGACTTGGAAAATGAGCTGGAAATTCTAGAAGATCTCAGATTTATCTTCGATAACATGATGGACAATTTGGATGACACAAATCTTGATGATAACAGAGAAAACTGCAGTTGGGATGAAAAATTGGCACTGGAGTATAAAATTCTACAAAGACGAATGGTCTCCTCTATCTCAACTTCATGCAATACTGGCATCGACGTGGTCAAGAATGAACTGTATAAGTGCATGGCCGAGGACATCCGAGGGTAG 1650 0.4079 MDTDEELSIVLELSKDDIFYDKKEKLLQSKGFSAKEVVCLRSFSEPGCMSDTVKVLVQIARIIHLNEVELYFADDASTLGEFYSPRNELEALNSIISLIDTLLSSCKHPHTNLLRELRTTILALISDFGGKDSLEAKVEKDHRCEQEEQLLEWGKSNGIKTQLWIAYVKGAGRGGIAEKDLKVGDIALEIPVSIIINEELVHETDMYCALKEVDGISPETILLLWSMKERHNQDSRFRAYFDSLPENFNTGLSFGIDAITTSEGTLLLEEIMEARQHLHAQYDQLFPTLCNAFPDIFPLKLYTWEQFLWACELWYSNSMKIMFSDGTLRTCLIPIAGFLNHSLCPHILHYGKVDPATNSLKFPLSRPCRSGEECCLSYGNFSNSHLITFYGFLPQGDNPYDVIPLDIDASGVGSLEDEPVSSWSNHMVRGTWLSNNHNLYYYGLPSPLLDHFRRCRNPMLHTKTFLQGDLENELEILEDLRFIFDNMMDNLDDTNLDDNRENCSWDEKLALEYKILQRRMVSSISTSCNTGIDVVKNELYKCMAEDIRG 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1478 549 FunFam Transcription factor, E2F and DP-related 145 393 - -
Prci4g1478 549 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 145 497 - -
Prci4g1478 549 Gene3D set domain protein methyltransferase, domain 1 144 393 - -
Prci4g1478 549 Gene3D - 2 119 IPR036464 -
Prci4g1478 549 Pfam SET domain 172 379 IPR001214 GO:0005515
Prci4g1478 549 SUPERFAMILY SET domain 146 400 IPR046341 -
Prci4g1478 549 CDD SET_LSMT 165 393 - -
Prci4g1478 549 Pfam Rubisco LSMT substrate-binding 15 106 IPR015353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1478 Prci-Chr4 12085497 12091794 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Prci4g1478 SET 4.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1478 K19199 - gmx:100778605 822.387