Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1442 ATGGACTCTTATCCCAACTGGCTCGCTTTCTCTCTCTCTAATCACTCCCCTCTCTTCCATTCATTCTCCTCAGGTACCACCGATGATGCGTCGCCGCAGGCGGCTGTTGGAGGACCTGCCACCAGCAACGACCTCTCCATCTTCGCCGGAGGCAGCCGCAAGTTCGAGGACTTCCTGGGCGGCTCCTCCGCCTCGTCGGTAGCAGATGCTACTGCTCCTCCTCCTCAGTTCTCAGCCGACAACGTTTTCAGTTCTGATCTCAAAACCATAGCCGCCGGCTTTCTCCCGCGCTTGGCCGCCGCCGAACAAGCCGAGCCTCGAAAACAGGCCCTGGCCGTGACCGTGCCTTCCCCTAGGAAGACCGCCGACACATTCGGCCAACGCACCTCCATCTACCGCGGCGTAACACGGCATAGATGGACTGGGAGATATGAAGCTCATCTATGGGATAATAGTTGTAGAAGAGAAGGTCAAAGTAGGAAAGGAAGGCAAGGTGGCTACGATAAGGAAGAGAGAGCAGCCAGAGCTTATGATCTCGCTGCTCTTAAATATTGGGGTCCAACTACCACCACCAACTTTCAGATTTCGAACTATGAGAAGGAACTGGAAGAGATGAAGAACATGACAAGGCAGGAATTTGTTGCTTCACTACGAAGGAAGAGTAGTGGCTTCTCTAGAGGGGCTTCAATATACAGAGGAGTGACAAGGCACCACCAGCATGGGCGATGGCAAGCAAGAATTGGCCGAGTCGCCGGAAATAAAGACCTTTATCTCGGCACTTTTAGTACTCAAGAGGAAGCTGCTGAAGCATATGACATTGCAGCTATAAAATTTAGAGGATTAAGTGCAGTGACCAACTTTGACATGAGCCGATACGACGTGAAGAGCATAGCAAACAGCAGTCTTCCCATAGGAGGATTATCATCCAAAGCCGAAAACTCATCAGACTCTTCTGCATCTGACAGCAAAAGCAACGATGGAAGCCTCAGATCAGCCGATAGTAACAACGTCGACCGAGACCCGTCCTCTCATTCATCGGTAACCTTCACGTCCCCCCCATCAACCTCGAACCACCTCAGCTTCGCCGTGCCCATCATCAAACAAGATCCAACCATGGATTACTGGTCCAATATCCTTGGCTACCACCAGAACCCTCCATCTCTCAAGAACCCTTCCAACACTGTTACTCTCGCTTCTCTGCAAAATTACAACAATAACAACACAATGGTACCGTTCAGCTTGGAGTTGCAGAGAAATAGCAATGCATTAATGGATGGGGGTGTGATTAATGCTCAGAACATTGAGCAGCAACAAAGCGGAAGCAATAATAATAATAGTAGTACCGGAACGGTGGATTCAAGTTTAAGTTCAGTGATAGCATTGGGCACTCCGATAGGTTTAAATAGTAACAGTAGTTATGAGAGTTCATCTGGATATGGAAACTGGAGTGTAGGGCCTGGTCTGCGCACATTCCAAACACATGCAAAAGGAAGTCTGTTTCAGACGCCAATATTTGGAATGGAATGA 1527 0.4938 MDSYPNWLAFSLSNHSPLFHSFSSGTTDDASPQAAVGGPATSNDLSIFAGGSRKFEDFLGGSSASSVADATAPPPQFSADNVFSSDLKTIAAGFLPRLAAAEQAEPRKQALAVTVPSPRKTADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEERAARAYDLAALKYWGPTTTTNFQISNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLSAVTNFDMSRYDVKSIANSSLPIGGLSSKAENSSDSSASDSKSNDGSLRSADSNNVDRDPSSHSSVTFTSPPSTSNHLSFAVPIIKQDPTMDYWSNILGYHQNPPSLKNPSNTVTLASLQNYNNNNTMVPFSLELQRNSNALMDGGVINAQNIEQQQSGSNNNNSSTGTVDSSLSSVIALGTPIGLNSNSSYESSSGYGNWSVGPGLRTFQTHAKGSLFQTPIFGME 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1442 508 ProSiteProfiles AP2/ERF domain profile. 230 288 IPR001471 GO:0003700|GO:0006355
Prci4g1442 508 ProSiteProfiles AP2/ERF domain profile. 131 194 IPR001471 GO:0003700|GO:0006355
Prci4g1442 508 Pfam AP2 domain 230 280 IPR001471 GO:0003700|GO:0006355
Prci4g1442 508 Pfam AP2 domain 131 186 IPR001471 GO:0003700|GO:0006355
Prci4g1442 508 SUPERFAMILY DNA-binding domain 130 196 IPR016177 GO:0003677
Prci4g1442 508 CDD AP2 229 290 IPR001471 GO:0003700|GO:0006355
Prci4g1442 508 SMART rav1_2 131 200 IPR001471 GO:0003700|GO:0006355
Prci4g1442 508 SMART rav1_2 230 294 IPR001471 GO:0003700|GO:0006355
Prci4g1442 508 Gene3D AP2/ERF domain 131 196 IPR036955 GO:0003700|GO:0006355
Prci4g1442 508 Gene3D AP2/ERF domain 230 290 IPR036955 GO:0003700|GO:0006355
Prci4g1442 508 CDD AP2 130 196 IPR001471 GO:0003700|GO:0006355
Prci4g1442 508 MobiDBLite consensus disorder prediction 305 356 - -
Prci4g1442 508 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 85 383 - -
Prci4g1442 508 FunFam AP2-like ethylene-responsive transcription factor 229 290 - -
Prci4g1442 508 SUPERFAMILY DNA-binding domain 229 290 IPR016177 GO:0003677
Prci4g1442 508 FunFam AP2-like ethylene-responsive transcription factor ANT 130 196 - -
Prci4g1442 508 PRINTS Ethylene responsive element binding protein signature 270 290 IPR001471 GO:0003700|GO:0006355
Prci4g1442 508 PRINTS Ethylene responsive element binding protein signature 132 143 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1442 Prci-Chr4 11834049 11837626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1442 59 508 AP2-EREBP Transcription Factor Family AT5G57390 52.677 2.85e-143 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Prci4g1442 AP2 1.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1442 K09285 - gmx:100803558 564.688