Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1369 ATGATACCAACTTATCGCTGTTCATCATCATCATCAGTCGTGTCCTCTTCCATGTCTTCAGATCTTAATTATGGACATCAAAACCATATTCAACCCTCTTCTACACCTTCTTCTCCACTTTATCATCCAGCAGATCGTCATCAATCATCACTGAATCACCTACAAGCAGATGCCGAGAAGACTGCCATGCCTTGTGGCAGATCGAGGAAGAAAGAAGATAAGAATGATCAAATTAACGAAGGATCAGCCAAGATGAGAAGAACGAGGAAGACGATGGTTTCGGATCAAACTATGCACAAATTTCAAGAAGATCATCAGAAGCAACCGTTATCTTCATCTTCATCAGCTAATTATAATATCAGTTTTATTAGGGTTTGTGCTGATTGCCACACCACTAAGACCCCTCTCTGGAGGAGTGGACCAACGGGCCCTAAGTCACTTTGCAACGCGTGTGGAATTCGACAAAGGAAGGCGAGGCGGTCCATGGCGGCAGCAGCTGGAGCTGCTCCGGCGAGAGAAAACAAAGTACACAAGAAACAGGAGATAAAGAAGCCATTATTGAAGAAGAAGAAGAAGAAACGAATGACTGATGGAGGTGGGAAGAAGGTTGTTTTAGAGGATTTAGCCATAAGCTTGAGCAAGAACTTGTCTCGACAGCAAGTTTTATTATTCCCACAGGACGAGAGAGAAGCTGCTATTCTGCTCATGGTTTTATCCTATGGTCTCGTTCGTGGATAA 738 0.4363 MIPTYRCSSSSSVVSSSMSSDLNYGHQNHIQPSSTPSSPLYHPADRHQSSLNHLQADAEKTAMPCGRSRKKEDKNDQINEGSAKMRRTRKTMVSDQTMHKFQEDHQKQPLSSSSSANYNISFIRVCADCHTTKTPLWRSGPTGPKSLCNACGIRQRKARRSMAAAAGAAPARENKVHKKQEIKKPLLKKKKKKRMTDGGGKKVVLEDLAISLSKNLSRQQVLLFPQDEREAAILLMVLSYGLVRG 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1369 245 Gene3D - 123 199 IPR013088 GO:0006355|GO:0008270
Prci4g1369 245 SMART GATA_3 120 171 IPR000679 GO:0006355|GO:0043565
Prci4g1369 245 Pfam GATA zinc finger 126 159 IPR000679 GO:0006355|GO:0043565
Prci4g1369 245 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 27 244 - -
Prci4g1369 245 MobiDBLite consensus disorder prediction 1 113 - -
Prci4g1369 245 CDD ZnF_GATA 125 155 IPR000679 GO:0006355|GO:0043565
Prci4g1369 245 MobiDBLite consensus disorder prediction 181 197 - -
Prci4g1369 245 MobiDBLite consensus disorder prediction 1 56 - -
Prci4g1369 245 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 120 160 - -
Prci4g1369 245 FunFam GATA transcription factor 21 121 199 - -
Prci4g1369 245 ProSiteProfiles GATA-type zinc finger domain profile. 124 156 IPR000679 GO:0006355|GO:0043565
Prci4g1369 245 ProSitePatterns GATA-type zinc finger domain. 126 151 IPR000679 GO:0006355|GO:0043565
Prci4g1369 245 MobiDBLite consensus disorder prediction 63 106 - -
Prci4g1369 245 MobiDBLite consensus disorder prediction 167 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1369 Prci-Chr4 11038450 11039985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1369 85 245 C2C2-Gata Transcription Factor Family AT4G26150 38.500 2.23e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci4g1369 GATA 5.6e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1369 - - pcin:129310140 426.402