Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1342 ATGAAGTCTGGCATCTTCTACTTCCTTCCTCTCAAAACTGTTCATCTATCTTCAGGAGAAAAGAGAAAACAAATCTTTCATCACGATCATATATTCGAGAGTTGCCATTGTGATCGACATCAATCGCTGCGCATGCTTGTAGACGTTGATAAACATAGCTCAAGAAACTACTTACCTGTGTATTCCTTCTGTGAAGTTTTGGGAACTATGAATCTCTTGAAGAATTCACCTCGTCACCATAGTGACATTGAGGCCGGAAGTAGCAGCCACTGCGATTATGACGACGCAGAAAGTTCGTCTGATCCATTTGTTATTCCAAGAACGAAGGATGCTCCTATTCAACGCCTCAAACGTTGGAGGCAAGCCGCGCTTGTGCTTAATGCTTCTCGTCGGTTCCGTTACACATTGGACTTGAAAAAAGAAGAGGAGAATCGGCAAATATTGGGGAAGATAAGGGTTCATGCAGAAGCAATTAGAGCTGCATATCTTTTCAAAGGTGCTGCTATAAACGGGGGGAATGAAATCACACCTCCTCACCCACGCCCAGTTGGTGACTTTGGTATCGGAAATGAAGAACTTCTTTCAATTTCTAGGGATCATAAAGTTGATGTCCTCCAACAATATGGTGGGGCTAGAGGGCTATCAGAATTGTTGAAATCTAGTACAGAGAAGGGGATTAATGGTGATGATGCAGATCTAATAAAAAGAAGAAATGCTTTTGGTTCAAACAATTATCCTCGAAAGAAAGGAAGGAGTTTTTGGATGTTTTTGTGGGATGCTTGCAAGGATCTGACCTTGATGATATTAATGGTAGCTGCGGCAGCTTCATTAGCACTAGGAATAAAAACTGAGGGTATTAAGGAAGGATGGTATGATGGGGGCAGCATTGCTTTTGCAGTAATTCTTGTTATTGTTGTTACAGCTATAAGCGATTATAAACAGTCTCTTCAGTTTCAACATCTGAATGACGAGAAGAGAAATATACATTTAGAGGTTATAAGAGGTGGTAGAAGGGTTGAGATCTCTATATATGACATCGTTGTTGGTGATGTTGTGCCCCTTAATATCGGTAACCAGGTCCCTGCCGATGGTATCTTGATCACTGGTCACTCTCTTGCTATTGATGAATCAAGTATGACTGGGGAGAGCAAGACTGTCTATAAGGACTCTAAAAACCCTTTTCTGATGTCTGGATGTAAAGTTGCAGATGGCAGTGGCACCATGCTGGTACTCGGTGTTGGTTTAAATACTGAATGGGGGCTTCTGATGTCTAGTATTTCAGAAGACAATGGTGAAGAAACGCCCTTACAGGTACGTTTAAATGGTGTTGCCACTTTCATTGGTATTGTTGGACTCTCTGTTGCTGTTATCGTTTTGATTGTGTTGTTGGCCAGATATTTCTCTGGGCATACTAGAGATGCAAATGGCAATGTTGAATTTAAGGCAGGCAAGACAAAAATTGGTGATGCAATTAATGGGGCAATTAAAATAGTTACAGTTGCGGTGACCATTGTTGTAGTTGCAGTGCCCGAAGGGCTTCCTCTAGCAGTTACCTTAACACTGGCTTACTCAATGAGAAAAATGATGGCGGACAAAGCTTTGGTGAGGAGGCTTTCAGCCTGTGAGACAATGGGCTCTGCAACAACCATTTGTAGTGATAAGACTGGTACATTGACCATGAATAAGATGACTGTGGTTAAGGTGTACAGTGGTGGGAAGAAGATTGGACCTGACAGCAAGTCAGAGCTCTCTCCGAATCTCTGCAATTTGATCACTGAAGGTGTTGCACAGAACACCAATGGCAGTGTCTCTATGGTTGGGGGTGATGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACATTGGGGAATTAAGATGGGGATGAATTTTGAGGCTGTCAGATCAGAGTCATCAATTATTCATGTCTTTCCATTTAATTCAGAGAAAAAACGTGGTGGAGTTGCAGTAAAGACGTCTGACTCTCAAGTTCACATACATTGGAAAGGTGCTGCTGAGATAGTCCTAGCCTGTTGTACATGGTATATTGAAGCAACCGGCCAGCTAGTGAAGATGGATGATAAGAAGATGGCATTTTTTCAAAAAGCTATTGAAGATATGGCTTCTGATAGTCTACGTTGTGTTGCCATGGCATATAGATCATATGAAATGACAAGTGTTCCAACTAGTGAAGAAGAACTTGCTCACTGGTCATTACCAGAGGATGATCTCATCTTACTGGCTATTGTTGGTCTGAAGGATCCCTGTCGACCTGGTGTCAGAGAGGCTGTGCAACTTTGCCAAAAAGCTGGAGTTAAGGTACGAATGGTTACTGGTGACAACTTAGAAACTGCAAAATCAATTGCTATAGAGTGTGGAATACTTCGAACATCGGCAGAAGCTGTGGAGCCCTACATCATTGAGGGGAAATCATTTCGTGCATTGTCAGATGAAGCCAGAGAAAAAGTTGCCCAAAATTTATTGGTTATGGGAAGGTCTTCTCCCAATGACAAGCTTCTGCTTGTGAAAGCATTGAGGAAGATGGGGCATGTTGTGGCTGTTACAGGAGATGGAACTAATGATGCTCCCGCCCTACATGAGGCAGATGTAGGTCTTGCAATGGGCATACAAGGGACAGAAGTTGCTAAGGAGAGCTCAGATATCATTATTTTGGACGACAACTTTGCTTCGGTTGTGAAGGTTGTCAGATGGGGGCGGTCTGTATATGCAAACATTCAGAAATTTATCCAGTTCCAACTTACCGTCAATGTTGCAGCTCTGGTTATTAATGTTATTTCTGCAGTTTCCTCTGGCGATGTCCCACTAAATGCAGTACAGCTTCTTTGGGTAAATCTCATCATGGACACACTTGGAGCACTTGCCTTGGCAACTGAACCACCTACGGATCGTTTGATGGATCGAGCTCCAGTAGGTAGAAGTGAACCTCTTATAACACACCACATGTGGAGGAATCTGCTTATACAGGCAATATATCAAGTGTCTGTTTTGCTTGTACTGACTTTCCAAGGTAGGACTTTATTGAATCTGAAGCATCACGCTGACGCTACCAAAGTGAAGAACACTTTAATATTCAATGCATTTGTTCTCTGTCAAATTTTTAATGAATTTAATGCACGAAAGCCAGATGAAAGGAACATATTCAAGGGAGTCACAAAAAACTATCTCTTCACGGGGATAGTGGCTTTAACTCTCATACTTCAGATTCTCATCATTGAATTCCTGGGGAAGTTCACATCAACAGTGAGGCTTAATTGGAAGCAGTGGCTCATTTGCGTTATCATTGGAGTTATCAGCTGGCCTCTTGCTTTGATTGGGAAATTCATACCCGTGCCAAGGAGTCGCTGTCACGAGTGGTTTTACAATTGTCTGGGGATGCAGCCAAGAAATCGGAATGGAACCTGA 3426 0.4244 MKSGIFYFLPLKTVHLSSGEKRKQIFHHDHIFESCHCDRHQSLRMLVDVDKHSSRNYLPVYSFCEVLGTMNLLKNSPRHHSDIEAGSSSHCDYDDAESSSDPFVIPRTKDAPIQRLKRWRQAALVLNASRRFRYTLDLKKEEENRQILGKIRVHAEAIRAAYLFKGAAINGGNEITPPHPRPVGDFGIGNEELLSISRDHKVDVLQQYGGARGLSELLKSSTEKGINGDDADLIKRRNAFGSNNYPRKKGRSFWMFLWDACKDLTLMILMVAAAASLALGIKTEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFQHLNDEKRNIHLEVIRGGRRVEISIYDIVVGDVVPLNIGNQVPADGILITGHSLAIDESSMTGESKTVYKDSKNPFLMSGCKVADGSGTMLVLGVGLNTEWGLLMSSISEDNGEETPLQVRLNGVATFIGIVGLSVAVIVLIVLLARYFSGHTRDANGNVEFKAGKTKIGDAINGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNKMTVVKVYSGGKKIGPDSKSELSPNLCNLITEGVAQNTNGSVSMVGGDVEVSGSPTEKAILHWGIKMGMNFEAVRSESSIIHVFPFNSEKKRGGVAVKTSDSQVHIHWKGAAEIVLACCTWYIEATGQLVKMDDKKMAFFQKAIEDMASDSLRCVAMAYRSYEMTSVPTSEEELAHWSLPEDDLILLAIVGLKDPCRPGVREAVQLCQKAGVKVRMVTGDNLETAKSIAIECGILRTSAEAVEPYIIEGKSFRALSDEAREKVAQNLLVMGRSSPNDKLLLVKALRKMGHVVAVTGDGTNDAPALHEADVGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVISAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDRLMDRAPVGRSEPLITHHMWRNLLIQAIYQVSVLLVLTFQGRTLLNLKHHADATKVKNTLIFNAFVLCQIFNEFNARKPDERNIFKGVTKNYLFTGIVALTLILQILIIEFLGKFTSTVRLNWKQWLICVIIGVISWPLALIGKFIPVPRSRCHEWFYNCLGMQPRNRNGT 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1342 1141 Pfam haloacid dehalogenase-like hydrolase 548 870 - -
Prci4g1342 1141 SFLD p-type atpase 533 908 IPR044492 -
Prci4g1342 1141 Gene3D - 113 166 - -
Prci4g1342 1141 FunFam Calcium-transporting ATPase 259 316 - -
Prci4g1342 1141 Gene3D - 548 901 IPR023214 -
Prci4g1342 1141 PRINTS P-type cation-transporting ATPase superfamily signature 771 781 - -
Prci4g1342 1141 PRINTS P-type cation-transporting ATPase superfamily signature 749 760 - -
Prci4g1342 1141 PRINTS P-type cation-transporting ATPase superfamily signature 551 565 - -
Prci4g1342 1141 PRINTS P-type cation-transporting ATPase superfamily signature 375 389 - -
Prci4g1342 1141 PRINTS P-type cation-transporting ATPase superfamily signature 880 892 - -
Prci4g1342 1141 PRINTS P-type cation-transporting ATPase superfamily signature 856 875 - -
Prci4g1342 1141 FunFam Calcium-transporting ATPase 873 1120 - -
Prci4g1342 1141 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 558 753 IPR023299 GO:0000166
Prci4g1342 1141 Gene3D - 561 756 IPR023299 GO:0000166
Prci4g1342 1141 Gene3D - 233 427 - -
Prci4g1342 1141 SUPERFAMILY Calcium ATPase, transmembrane domain M 209 1118 IPR023298 -
Prci4g1342 1141 ProSitePatterns E1-E2 ATPases phosphorylation site. 553 559 IPR018303 -
Prci4g1342 1141 SFLD Haloacid Dehalogenase 533 908 - -
Prci4g1342 1141 CDD P-type_ATPase_Ca_PMCA-like 235 989 - -
Prci4g1342 1141 Pfam E1-E2 ATPase 329 529 - -
Prci4g1342 1141 PRINTS Sodium/potassium-transporting ATPase signature 544 565 - -
Prci4g1342 1141 PRINTS Sodium/potassium-transporting ATPase signature 667 685 - -
Prci4g1342 1141 PRINTS Sodium/potassium-transporting ATPase signature 294 314 - -
Prci4g1342 1141 Pfam Cation transporting ATPase, C-terminus 941 1116 IPR006068 -
Prci4g1342 1141 FunFam Calcium-transporting ATPase 111 167 - -
Prci4g1342 1141 FunFam Calcium-transporting ATPase 9 plasma membrane-type 405 575 - -
Prci4g1342 1141 FunFam Calcium-transporting ATPase 561 756 - -
Prci4g1342 1141 SUPERFAMILY Calcium ATPase, transduction domain A 329 424 IPR008250 -
Prci4g1342 1141 FunFam Calcium-transporting ATPase 306 427 - -
Prci4g1342 1141 FunFam Calcium-transporting ATPase 749 901 - -
Prci4g1342 1141 PANTHER CATION TRANSPORTING ATPASE 162 1118 - -
Prci4g1342 1141 NCBIfam HAD-IC family P-type ATPase 491 574 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Prci4g1342 1141 NCBIfam HAD-IC family P-type ATPase 822 936 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Prci4g1342 1141 Pfam Cation transporter/ATPase, N-terminus 210 276 IPR004014 -
Prci4g1342 1141 SMART Cation_ATPase_N_a_2 208 281 IPR004014 -
Prci4g1342 1141 SUPERFAMILY HAD-like 549 961 IPR036412 -
Prci4g1342 1141 Gene3D - 259 1112 - -
Prci4g1342 1141 NCBIfam calcium-translocating P-type ATPase, PMCA-type 200 1118 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Prci4g1342 1141 Pfam Ca2+-ATPase N terminal autoinhibitory domain 101 143 IPR024750 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1342 Prci-Chr4 10826655 10853029 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1342 71 1119 Primary Pumps ATPases AT5G57110 72.917 0.0 1558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1342 K01537 - gmx:100792945 1633.23