Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1328 ATGACGGACCAGACGGAGTTCAGTGTTCTATGCAGCCTCTTCACATGGACTCAGAGAAGCAAGTCCTCTGCCAAGAAGCGCTCCAAGTTCCGCAAATTCCTCGATACCTTCTGCAGGGACAAAGATTATTTCAGTGCGATTCGGTTGATTCTTCCCAATCTCGACCGAGAGAGAGGCTCCTATGGGCTCAAGGAGTCGGTTCTCGCTACCTCTCTCATTGACGCTCTTGGGATGTCCAGGGAGTCCGAGGACGCTCTGCGTCTCATCAATTGGCGCAAAGGTGGTGCAAACACCGGTGCCCATGCTGGAAATTTTGCTCTTGTCGCAGCTGAGGTGCTGCAACGTAGGCAAGGGTTGGCATCTGGTAGATTGACAATAAGGGAGTTAAATGAGCTGCTTGATAAACTAGCTTCAAGTGAAAACAGGTCTGAGAAGACTTCAGTTCTTTCTACCCTTATTCAAAAGACAAATGCTCAGGAAATGAAGTGGATTATCATGATAATACTCAAAGATCTAAAGCTTGGAATTAGTGAAAAGAGCATTTTCCATGAATTCCATCCAGATGCTGAAGACTTGTTTAATGTAACTTGTGACTTGAAATTAGTTTGTGAAAAGCTAAAGGATCGGAATCAACGTCATAAGCGACAGGATATTGAAGTTGGAAAAGCTGTGCGCCCTCAACTAGCAAGGAGAGTTGCTAGTGCAACTGAAGCATGGAAAAAGCTCCATGGGAAGGAAGTTGTTGTCGAGTGCAAGTTTGATGGTGATCGAATCCAAATTCATAAAAATGGAACGAATATACATTTCTTCTCAAGGAACTTTCTTGACCATTCAGAATATCAACATGGGATGTCAGACATCATATTGCGAAATATTCTTGTTGACAGGTGTATTCTTGATGGTGAGATGTTGGTTTGGGATAAATCCTCTAACCGTTTTGCCGAATTTGGTTCAAATCAGGAAATTGCAAAGGCAGCGAGGGACGGGCTTGATAGTGATAGACAGTTATGTTACGTTGCATTTGATATCCTTTATGTTGGAGATACAAGTGTAATACACCAGACTTTGAAGGAAAGACACGAGCTTCTCTGTAAAGTTGTGAGGCCCTTGAAGGGTAGTTTGGAAATTTTAATACCTAATGGTGGTCTCAACTCTAATTGTCCATCTGGGGATGCTTGTTGGTCATTTATTGCTCGTAGTGTGGATGAAGTTGAGAGATTTTTCAAAGAAACTATTGAGAATAGAGATGAGGGCATTGTTCTGAAAGACCTTGGTTCCAAATGGGAACCCAGTGACCGAAGTGGGAAGTGGATGAAATTGAAGCCAGAGTACATACGTGCTGGTTCTGATCTGGATGCGCTTATCATAGGTGGCTATTATGGCTCTGGACGAAGAGGAGGGGAGGTTGCTCAATTTTTGGTGGGCCTCGCGGAGCGTCCCTCCCCTAGTGCTCATCCTAAGCGATTTATCTCATTTTGCAGAGTTGGTACTGGACTTTCTGATGATGAACTTGATGCCCTAGTAACCAAGCTGAAACCATATTTCAGGAAGTATGAATACCCAAAGAAGAAGCCACCAAGTTTTTATCAAGTGACTAACCATTCAAAAGAACGACCTGATGTGTGGATTGAGAGCCCTGACAAATCAATAATTCTCTCTATTACCAGTGACATTCGAACTATAGAGTCTGAGGTATTTGCTGCACCTTACAGTCTGAGATTTCCTAGAATTGACAGGGTGAGATATGACAAACCCTGGTATGAATGTCTTGATGTGCAATCATTTATAGAACTCGTGCATTCTAGCAATGGCACCACAAAGGCAAGTACAGAGTATGGCAGCATGCAGGATAGTAAATCAAAACGCATTAAATCCTCTAAAAGGGAAGTAAAGAAAAGCATGCCTGTTGTCCCTTCTCATCTAATTCAGACGGATGTTTCCAATGTGAAGGGTGGCTCGTTAATATTCTCAAATATGATGTTTTATTTTGTCAATGTGCCTTCATCCCATTCTCTTGATTCCTTGCACAAGATGATTGCTGAGAATGGGGGAACTTTCTCCATGAACTTGAATAATTCAGTCACCCATTGTGTTGCAGCAGATAGCAAGGGTTTTAAATTTGAAGCCGCAAAACGTCGTGGTGATATCATTCATTATAGTTGGATCTTAGATTGCTGTACGCAAAAGAAGCTTATTCACTTACAGCCAAAGCACTTCCTTTTCCTTTCTGAACTCACAAAGAAGAAGTTATATGAAGAAATTGATGAGTTCTCAGACTCATACTACTTGGATCTTGATTGTGCGGACATCAAGCAGCTCTTCAGCAATATTCCCAGATCAAAAAAAGATGTCAGCACTATCAACTATTACAGGAAAAAGTACTGCCCAAATGATAAGTGGTCTCACTTTCAAGAATGCTCCATTTATCTCCACACTTTTTTGCCACCTTCGAAAGGAGATTGGGGAGTTCTGTTGGGACTTTCTCTGAGGAGATTGCAGTCTGAAATTCTCATGAGTGGTGGCAGAGTTACCGATAGTCCCACTTCTGCTACGCACTTTGTGGCCTTCTCGGTTCCAGGATATAATGTAGACTTCAAAGAAATGTTAGCAAGTTTCACTTCAGTTGAAGGGAAATTTCTGTCGAGCAAGAGGTTGCATGTTGTTGGATCTCAGTGGCTTGAAGATTGTTTAAAACAAGGCCGAAGATTGCCAGAGCAAACATATACATTGAAGCCCAGCGGAATAGAAGAACTAACTGCTGAAGACTGCAAGTATGACTTGGCTTCAGAGGGTTATTGTGGTGCAAATAATGTAGAAGAGCAAAGTTCGTCACTTGTCTCTGAAAACAGAAGTCAGCTGAGAAGTGCAAAAGCTGTTGATGAAACCTTGGTGTCTGTGGAGAAGTGTGGCAAAAGGAAACGAGGAAGACCTGCAGGCATAGGCAGTAAAATGGTTAAAACAGCTGGCAACCAAACTCATCGATCACGAGCACGTATTGGAATAAGGCCTGCAAAAATATGTGAATATGGAACCGATGAAAGTGGTTCTCATGATGAAAAACCATGTGCTGGTGAGATTGACACGAGAGAATTCAGTCTTGACTCTCACAATGGCGCAAAAGTCCCTGAGATTGTGATGTTACAAAATTCTGACCCATCAAAACGAGACGATGCAGTTAGGCAAGAGGTTTTGAAGGACGGTGAACATGAAGAATATTCTGTTCCCGAAATTGGAAAGACGGAGCAGCATAATGACCAAAACAGTAGGACTGAAAAACTTGAAATTATGGCTGATCCAATTCAGGCTATGCTTTTTGACATGTTTCCTAGCCTTGCGACAAAGGAAGTTGATAAAACAAAGAATGAGAATGTTGATGATAAGCCACCGGAGCAATCCAATGCGGGGCCTACAAGGAAAAAGAAAGTTAGCTATAAGGATGTTGCCAGTGAGCTGCTCAAGGATTGGTAG 3468 0.4236 MTDQTEFSVLCSLFTWTQRSKSSAKKRSKFRKFLDTFCRDKDYFSAIRLILPNLDRERGSYGLKESVLATSLIDALGMSRESEDALRLINWRKGGANTGAHAGNFALVAAEVLQRRQGLASGRLTIRELNELLDKLASSENRSEKTSVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLARRVASATEAWKKLHGKEVVVECKFDGDRIQIHKNGTNIHFFSRNFLDHSEYQHGMSDIILRNILVDRCILDGEMLVWDKSSNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYVGDTSVIHQTLKERHELLCKVVRPLKGSLEILIPNGGLNSNCPSGDACWSFIARSVDEVERFFKETIENRDEGIVLKDLGSKWEPSDRSGKWMKLKPEYIRAGSDLDALIIGGYYGSGRRGGEVAQFLVGLAERPSPSAHPKRFISFCRVGTGLSDDELDALVTKLKPYFRKYEYPKKKPPSFYQVTNHSKERPDVWIESPDKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKPWYECLDVQSFIELVHSSNGTTKASTEYGSMQDSKSKRIKSSKREVKKSMPVVPSHLIQTDVSNVKGGSLIFSNMMFYFVNVPSSHSLDSLHKMIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRRGDIIHYSWILDCCTQKKLIHLQPKHFLFLSELTKKKLYEEIDEFSDSYYLDLDCADIKQLFSNIPRSKKDVSTINYYRKKYCPNDKWSHFQECSIYLHTFLPPSKGDWGVLLGLSLRRLQSEILMSGGRVTDSPTSATHFVAFSVPGYNVDFKEMLASFTSVEGKFLSSKRLHVVGSQWLEDCLKQGRRLPEQTYTLKPSGIEELTAEDCKYDLASEGYCGANNVEEQSSSLVSENRSQLRSAKAVDETLVSVEKCGKRKRGRPAGIGSKMVKTAGNQTHRSRARIGIRPAKICEYGTDESGSHDEKPCAGEIDTREFSLDSHNGAKVPEIVMLQNSDPSKRDDAVRQEVLKDGEHEEYSVPEIGKTEQHNDQNSRTEKLEIMADPIQAMLFDMFPSLATKEVDKTKNENVDDKPPEQSNAGPTRKKKVSYKDVASELLKDW 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1328 1155 SUPERFAMILY BRCT domain 792 912 IPR036420 -
Prci4g1328 1155 Pfam BRCT domain, a BRCA1 C-terminus domain 653 737 IPR001357 -
Prci4g1328 1155 MobiDBLite consensus disorder prediction 1067 1088 - -
Prci4g1328 1155 Pfam DNA ligase IV 746 777 IPR021536 GO:0003910
Prci4g1328 1155 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Prci4g1328 1155 MobiDBLite consensus disorder prediction 606 629 - -
Prci4g1328 1155 CDD Adenylation_DNA_ligase_IV 214 445 IPR044125 GO:0005524
Prci4g1328 1155 ProSiteProfiles ATP-dependent DNA ligase family profile. 329 478 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Prci4g1328 1155 CDD BRCT_DNA_ligase_IV_rpt1 655 741 - -
Prci4g1328 1155 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Prci4g1328 1155 CDD OBF_DNA_ligase_IV 448 592 - -
Prci4g1328 1155 ProSitePatterns ATP-dependent DNA ligase signature 2. 417 441 IPR016059 GO:0003909
Prci4g1328 1155 Pfam ATP dependent DNA ligase C terminal region 465 584 IPR012309 GO:0003910|GO:0006281|GO:0006310
Prci4g1328 1155 NCBIfam ATP-dependent DNA ligase 61 598 IPR000977 GO:0003910|GO:0005524|GO:0071897
Prci4g1328 1155 MobiDBLite consensus disorder prediction 972 995 - -
Prci4g1328 1155 PANTHER DNA LIGASE 4 3 1148 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Prci4g1328 1155 Pfam ATP dependent DNA ligase domain 226 441 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Prci4g1328 1155 Pfam DNA ligase N terminus 6 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Prci4g1328 1155 FunFam DNA ligase 444 605 - -
Prci4g1328 1155 Gene3D - 445 605 IPR012340 -
Prci4g1328 1155 SUPERFAMILY BRCT domain 655 736 IPR036420 -
Prci4g1328 1155 Gene3D DNA ligase/mRNA capping enzyme 220 443 - -
Prci4g1328 1155 SMART BRCT_7 806 900 IPR001357 -
Prci4g1328 1155 SMART BRCT_7 653 729 IPR001357 -
Prci4g1328 1155 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 3 208 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Prci4g1328 1155 ProSiteProfiles BRCT domain profile. 651 739 IPR001357 -
Prci4g1328 1155 FunFam DNA ligase 666 780 - -
Prci4g1328 1155 ProSiteProfiles BRCT domain profile. 803 910 IPR001357 -
Prci4g1328 1155 FunFam DNA ligase 1 218 - -
Prci4g1328 1155 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 442 - -
Prci4g1328 1155 Gene3D BRCT domain 665 779 IPR036420 -
Prci4g1328 1155 Gene3D BRCT domain 799 910 IPR036420 -
Prci4g1328 1155 MobiDBLite consensus disorder prediction 1114 1145 - -
Prci4g1328 1155 SUPERFAMILY Nucleic acid-binding proteins 449 600 IPR012340 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1328 214 601 Core DNA Replication Machinery Family AT1G08130 26.799 2.94e-29 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1328 K10777 - gmx:100816002 1722.98