Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1310 ATGTGTTTGTCGTTTTTAGAGACGGCGATGGAGGACCAGAGAAAGAAGAACGTGACAAAGACAGAGGAGCGAACCTCGAAGGTCAGGAGGGCGAATATCGTTCCATGCTTGACGTGTCCTTTGTGTAATAAATTCTTCAGAGACGCCACCACTATATCAGAATGCTTGCACACCTTTTGCAAGGAATGCATATGGAAGAAGTTCAGAGATGAGCGTCAGACGCATTGTCCAGTATGCGATAAAGACCTGGGTTGTTATCCGCTGGACAGACTAAGGGCAGACCACACTCTTCAAGACTTAAGGGATAAAATTTTCCCTCATGAGGAAAAAGGTGTGAGGGAGAAAATTTTCCCTCGTGAGGGAAAAAGTGCCAAGGCACCTGAAAGTGTGCCTTTGCCTTCCTTTCTATTGCCATCCAATTCCAAGAAAAAGGAGAGGTCTGTCTCTTCATTAGGTTCCAGTTCAACTCAGCTATCAAGCCATTCTTGTCTAGTTGAAAGAAGGGCAAAAACCGCTGCGAAAAAATTTTTGGCTGAACAAGAATCTGCTCTCAATGCCTTTGAGTTAGAGAAAAAATCAGCTGGTAAGAAACAAGGAAGACTCAATGAGGTAGAAATTTTGGAAGGCTCTCCCAAAAATTTATCAAGAGCAAAGTCTTCAGCAAGGAAAAAACCCATTTCAAGAGAATACATTCCCTCTACTAGTCAACCTCAGCCACAGCAAGTCGCAGAAGATAGCAAGACAGACCAGCAGCACTGTCAGCTTGAAAGTGAAAATGTGACGAGTGAAATTGAGAATCCCAAGGCTTCCTTAGATTTGAACCAGCAAGAAGTGCCCAATGAAACTTCTGAGAAAAATGCTGCGTCATGGAAAGGAAAAGATCTTTTGTGGGAGCCCTTACACTTCCTGATGGAAGCTGCACAAAAGGCAAAGTCTATGGGGGCCAACAATGTGCAAGAAAATGCTACTATTGCAGTGCCTGTTGAATCTTGCAACAATGACTCCAATCCTACCAAAATTATGGCAGCTAGTGATCAAAATGAGGCAACTCCAGTTCAATCAGATCCCATCAAAACTAAGGGATTGAGGATCAAACAACAAAGAAGAGTCAAATTTTCTCAGGACTTAAATTTTCCTGCAGAACCTGTACCTGCTGTTTCAAGCAACCCAGTACCTGCTGTTTCAAGAAGCCCTGTACCTGCTGTTTCAAGCAGCCCAGTACCTGCTGTTTCAAGCAGCCAAAGCAACGAAAGAATCACTCCGATATGGTTTTCTTTAGTTGCTTCTGAAGAGAAGGATGTACGTGCAAGATTGCCACAGATGCCTTCTTGCTACCTGAGGGTTAAGGATGTCAATTTACCTGTATCATTCATCAAGAAGTATATAATGAAGAAGCTTGATCTTGCAAGCGAAGCTGAGGTGGAAATCTCATTAAAAGGGAAGCCATTGTCATCTTCTCTGCAACTGAAGCAAGTAGCAGAGATGTGGCTAGAGACAGTTCCAAAGTCTGAGACGATTCATTCGTTTGTTGGGGACTCAGCAAGAGAGTTTGTGATGGTTCTTTCCTATGGTCGAAAGATTTAG 1584 0.4324 MCLSFLETAMEDQRKKNVTKTEERTSKVRRANIVPCLTCPLCNKFFRDATTISECLHTFCKECIWKKFRDERQTHCPVCDKDLGCYPLDRLRADHTLQDLRDKIFPHEEKGVREKIFPREGKSAKAPESVPLPSFLLPSNSKKKERSVSSLGSSSTQLSSHSCLVERRAKTAAKKFLAEQESALNAFELEKKSAGKKQGRLNEVEILEGSPKNLSRAKSSARKKPISREYIPSTSQPQPQQVAEDSKTDQQHCQLESENVTSEIENPKASLDLNQQEVPNETSEKNAASWKGKDLLWEPLHFLMEAAQKAKSMGANNVQENATIAVPVESCNNDSNPTKIMAASDQNEATPVQSDPIKTKGLRIKQQRRVKFSQDLNFPAEPVPAVSSNPVPAVSRSPVPAVSSSPVPAVSSSQSNERITPIWFSLVASEEKDVRARLPQMPSCYLRVKDVNLPVSFIKKYIMKKLDLASEAEVEISLKGKPLSSSLQLKQVAEMWLETVPKSETIHSFVGDSAREFVMVLSYGRKI 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1310 527 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 26 526 IPR044807 GO:0004842
Prci4g1310 527 Gene3D - 411 502 - -
Prci4g1310 527 FunFam Polycomb group RING finger protein 3 23 123 - -
Prci4g1310 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 126 IPR013083 -
Prci4g1310 527 MobiDBLite consensus disorder prediction 134 156 - -
Prci4g1310 527 MobiDBLite consensus disorder prediction 212 289 - -
Prci4g1310 527 SMART ring_2 39 79 IPR001841 -
Prci4g1310 527 MobiDBLite consensus disorder prediction 345 364 - -
Prci4g1310 527 MobiDBLite consensus disorder prediction 381 400 - -
Prci4g1310 527 ProSiteProfiles Zinc finger RING-type profile. 39 80 IPR001841 -
Prci4g1310 527 Pfam Zinc finger, C3HC4 type (RING finger) 39 79 - -
Prci4g1310 527 SUPERFAMILY RING/U-box 33 105 - -
Prci4g1310 527 CDD RING-HC_PCGF 37 80 - -
Prci4g1310 527 MobiDBLite consensus disorder prediction 115 156 - -
Prci4g1310 527 Coils Coil 177 197 - -
Prci4g1310 527 ProSitePatterns Zinc finger RING-type signature. 55 64 IPR017907 -
Prci4g1310 527 MobiDBLite consensus disorder prediction 229 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1310 Prci-Chr4 10496166 10500607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1310 26 449 C3H Transcription Factor Family AT2G30580 29.587 1.82e-45 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1310 K16277 - cave:132179402 298.901