Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1266 ATGGGGAGAAGCCCTTGCTGCTCCAAGGAGGGCTTGAACAGGGGCGCCTGGACTGCCCACGAAGACAAAATCCTCCGTGACTACATTTCCGTCCACGGCGAAGGACGGTGGCGAAACCTCCCCAAACGAGCTGGTTTGAAGAGGTGCGGGAAGAGTTGCAGGCTCCGGTGGCTCAACTATCTCAGACCAGATATCAAGAGAGGCAATATAACTCCTGATGAAGAAGAGCTTATCATCCGCCTTCACAAGCTCTTGGGAAACAGATGGTCTTTGATAGCGGGCAGGCTTCCAGGGCGAACAGACAATGAAATAAAGAATTACTGGAACACTAATTTGGGTAAGAAAGTGAAGGATCCTCGTCACCACAACAATGTTGCTTCCTCTGGGAGGCTCTCTGCTCGGCCTAAGACACACAGAACTTCCAAGAACAATAATAATAGTAATAGTAATAATAATAATCCTGCAAATCTCAGACCCAAAACACCCTCCGTGCCTTCTCAGGATTGCAAGCTCAACGAGTCCCTCTCCAGTGTTGTTGTCCGTGCGAAAGCCACCAAGTGCTCTAAGGTCATCATCACCCCACGTCCTTGTTCGAGGCAATTCTTGCAAAAGACCGGGTCTGAAGCAGAGTCATGTTCGCCGGCGGATGTTGCGGCGGCCTACTGTTACCAGACGCCGGAAGTTGTCACCGCCCGCGAGAACAACGCGTCGCTGTCGTTCGGAGCTGGGAAGCATCATCATCATCATCAAGAGCCGTCGTCCACAGATTTGCTGGTGGATTTCAACGTGGGGGAGATCTGCTTGTCGGAACTCCTGAACTCGGATTTCTCGGATATGTGCGACTTCAGTAACAACAGCGTCGACGGCTTATCCCCGACGTCGGACCAGCCCTTCGTGTTCTCCGATGAAATCCTGAAGGACTGGACGCAGCAGGGCAACGTGGAGGAGACGAATGCGGCCAATAATCTTCACTCCTTCACATCGTTCCTTGAATCCAGTGACGGATGGCTGGCGGAGTAA 1020 0.5216 MGRSPCCSKEGLNRGAWTAHEDKILRDYISVHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNITPDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDPRHHNNVASSGRLSARPKTHRTSKNNNNSNSNNNNPANLRPKTPSVPSQDCKLNESLSSVVVRAKATKCSKVIITPRPCSRQFLQKTGSEAESCSPADVAAAYCYQTPEVVTARENNASLSFGAGKHHHHHQEPSSTDLLVDFNVGEICLSELLNSDFSDMCDFSNNSVDGLSPTSDQPFVFSDEILKDWTQQGNVEETNAANNLHSFTSFLESSDGWLAE 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1266 339 Gene3D - 14 66 - -
Prci4g1266 339 SMART sant 66 114 IPR001005 -
Prci4g1266 339 SMART sant 13 63 IPR001005 -
Prci4g1266 339 CDD SANT 16 61 IPR001005 -
Prci4g1266 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci4g1266 339 FunFam MYB-related transcription factor 13 66 - -
Prci4g1266 339 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci4g1266 339 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci4g1266 339 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Prci4g1266 339 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Prci4g1266 339 MobiDBLite consensus disorder prediction 125 169 - -
Prci4g1266 339 MobiDBLite consensus disorder prediction 113 169 - -
Prci4g1266 339 CDD SANT 71 112 IPR001005 -
Prci4g1266 339 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 177 - -
Prci4g1266 339 Gene3D - 71 156 - -
Prci4g1266 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Prci4g1266 339 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1266 Prci-Chr4 10051964 10053576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1266 1 134 MYB Transcription Factor Family AT4G09460 65.217 2.76e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci4g1266 Myb_DNA-binding 4.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1266 K09422 - gmx:100781908 349.362