Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1237 ATGGATAGCGTCTTCTCCTTCTCCGAAGCCCAAAGACTTGAATTCCTCCGATCAGTACGTCACACTTTTGGCTGCGCTTATATCTGCCTCTGGTCCTACAGTTCCTCATCCAATCGGTTGCTCTTCTTGGATGGTTTGTACGACGTCGCACCGAATCACCAAGCCGTCTCTTCTTCTCTGGGTTTGGCGAGTGTGGATCAGGGGCTTTTTGATCAATATAGGGGTTTCGAATTTGATGTCACTGCTTCTGATAATGGCGTTCCCGGACTCGCTTTCCGTAACCACCAGTACACCTGCCTAGAGCTGCAACAATCCGATCTCCTGAGACTGGCGCGGACAGATGTACAAAGAAGGTTCTTTCAGGAAGCAAGGATTAAGACAGCTGTTTTCATAGGTTGTGGAAATGGGGAAATTGAGCTTGGTTTCTCATCAGTTGTCTCTGATCAAGGTGGTAAGATTCAAACAGATATGAGGAACTTGTTTCCAGAAGAATTTTCTAGACAGTCCCATCCAGCTGAACTGAGGATTATTAATCCACCTTCTTCATCTTCTTCATCTTCCTTGAGATCATTTTCCACGGCAAGCGGCCCCGAAAACACATCCTTCCTATTCGGTAATAATTTTCTGGGCACTCGTCTGTTGCCTGAAATGCTGCAGCAGCAAGAGAATGAACACGACTCGATAGTTAGAGCAATTCTTCATGTTATATCTTCGCCTTCTTCTTCTTCTAATGATTTAGCCTTTCATCATCAGCAAAATCTGCCTGATACACCTCCAGAACTAGAAGGAACTTGTGCTTTTACGAGTTACAGGCCTTCAGAAATGGATTGTTCCAAATCCAATTTGGGCAGGCAGCAAAGTTTGCTCAAGAGATCATTTGAATTGTTCAGAGGCTTACATTACATGAAGATGAGAGAGCGTTATCAAGCAAGTCGTCCCACTAGTACCCAGCTCCTTCATATGATATCAGAACGAAGAAGACGTGAGAAACTCAGTCAGAATTTTCAGGCACTTTGGTCACTACTCCCTCCAGGAACCAAGAAAGACAAAGCTTCAATACTTACAGCAGCAAAGGAGACATTGAACTCTTTGATGGCTGAGATTGAAAAGATGACCAAAGGAGATCAGCAAGTTGAGGCACAAATGAAAGCAAAGCAATTATTAAAAGGTCAAGAAACGAATACCAGTCCCTCTGTTGAAAGATTGATTGTGCGAGTTTCTGATGTACCGAGATCGAGCTTATCAGAGGAAAGATTCATCGACCTGCAAGTGACTGTGAGAGGACAACGCAATTCTCAGGTCGATATATTGATTCGCCTATTGGAATTCTTGAAAAGTGTTCAGAGAGTGAGTTTAGTTTCTGTGGACGCTAACACACGCATAGCACAACAAGGAACCGCCATTAATGAAGCAACTTTGAGACTGAAGATAGAGGGGAGCGAATGGGATGAGGCTGCCCTTACAGAAGCAGTGAGAAGGATGGTTGCTGACCTGGCGAACTGA 1503 0.4438 MDSVFSFSEAQRLEFLRSVRHTFGCAYICLWSYSSSSNRLLFLDGLYDVAPNHQAVSSSLGLASVDQGLFDQYRGFEFDVTASDNGVPGLAFRNHQYTCLELQQSDLLRLARTDVQRRFFQEARIKTAVFIGCGNGEIELGFSSVVSDQGGKIQTDMRNLFPEEFSRQSHPAELRIINPPSSSSSSSLRSFSTASGPENTSFLFGNNFLGTRLLPEMLQQQENEHDSIVRAILHVISSPSSSSNDLAFHHQQNLPDTPPELEGTCAFTSYRPSEMDCSKSNLGRQQSLLKRSFELFRGLHYMKMRERYQASRPTSTQLLHMISERRRREKLSQNFQALWSLLPPGTKKDKASILTAAKETLNSLMAEIEKMTKGDQQVEAQMKAKQLLKGQETNTSPSVERLIVRVSDVPRSSLSEERFIDLQVTVRGQRNSQVDILIRLLEFLKSVQRVSLVSVDANTRIAQQGTAINEATLRLKIEGSEWDEAALTEAVRRMVADLAN 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1237 500 CDD bHLH_AtbHLH_like 320 371 IPR045239 -
Prci4g1237 500 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 381 IPR036638 GO:0046983
Prci4g1237 500 Gene3D - 316 390 IPR036638 GO:0046983
Prci4g1237 500 SMART finulus 321 370 IPR011598 GO:0046983
Prci4g1237 500 Pfam Helix-loop-helix DNA-binding domain 320 364 IPR011598 GO:0046983
Prci4g1237 500 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 112 497 IPR044658 -
Prci4g1237 500 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 315 364 IPR011598 GO:0046983
Prci4g1237 500 Coils Coil 354 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1237 Prci-Chr4 9764885 9769913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1237 1 500 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 37.091 1.99e-86 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci4g1237 HLH 1.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1237 - - pcin:129308826 949.888