Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1209 ATGAGGTCCTTCATGTCCCGTCGGGTGGTCCAGGACGGTTCCGTGGAGGTGGTCATCGCCGATGGCCTGAAGCAGAGTTTCTGGGCCAACATGCCGCAGGAGCTTCTCAGAGAGGTGCTGGCCAGAATCGAAGCATCCGAGAGCTCTTGGCCTGCCCGTCGGAGTGTGGTGGCTTGTGCCGGAGTGTGCCGCACTTGGAGGCTCATCACGAAGGCCATCGTCAACTCACCTGACGTTTCCTCTAAGATCACCTTTCCCATCTCTGTTAAGCAGCATGGCCCGAGGGAAAATCTCCTCCAATGCTTCATAAAGCATAACAGGTCAACCCAAACATATTATTTGTTTCTCAGTTTAACAAATGCATTATGTGATGAGGGAAAGTTTCTTCTGGCAGCGCGCAAGTGCAGACGTCCTACTTGCACAGATTATATAATCTCTCAAGATGCTGATGATATGTCAAAGGAAAGCAACGCCGCCTATGTTGGGAAACTGAGATCAAATTTTCTGGGAACAAAGTTCACAATTTATGATGGCCAGCCACCTCACAAAGAGGCAAAGACTACAAAAAGCCGTTCCGTTAGACTGGGGAATCTGTTTGGCAGGGCTTCTACTGGTAACTATCCAGTGGCACACGTCTTATATGAATTAAATGTGCTAGGTTCCAGGGGTCCAAGGAAAATGAAATGTATCATGGACACCATTCCTGCCCCTGCAATTCAACCCGGAGGGGTGAGACAACCGATGCAGACTGAGTTGTCTCCGAGCTATGTAAAAAAAGTCCCATTATTCCCATTTTTAAGGTCAAAATCAAATCGAATTGAAAACTCTAAATCTGGGCCTCTGGCCAGTGATAGGATGCTCGTGCTAAAAAGTAAGCCTCCAAGATGGCACGAGCAGCTCCAATGTTGGTGCTTGAACTTCAATGGACGAGTGACAGTTGCTTCAGTTAAGAACTTTCAGCTGGTGGCTTCCCCAGAGAATGGACCTATTTCTGAAGCAGAACATGAGAAGATAATCCTGCAATTTGGAAAAGTAGGGAAGGATTTGTTCACAATGGACTATCAATACCCCATCTCTGCATTTCAGGCTTTTGCAATTTGCCTCAGCAGCTTTGAAACCAAAATTGCTCGTGAATGA 1137 0.4714 MRSFMSRRVVQDGSVEVVIADGLKQSFWANMPQELLREVLARIEASESSWPARRSVVACAGVCRTWRLITKAIVNSPDVSSKITFPISVKQHGPRENLLQCFIKHNRSTQTYYLFLSLTNALCDEGKFLLAARKCRRPTCTDYIISQDADDMSKESNAAYVGKLRSNFLGTKFTIYDGQPPHKEAKTTKSRSVRLGNLFGRASTGNYPVAHVLYELNVLGSRGPRKMKCIMDTIPAPAIQPGGVRQPMQTELSPSYVKKVPLFPFLRSKSNRIENSKSGPLASDRMLVLKSKPPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPENGPISEAEHEKIILQFGKVGKDLFTMDYQYPISAFQAFAICLSSFETKIARE 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1209 378 CDD F-box_AtTLP-like 28 71 - -
Prci4g1209 378 SUPERFAMILY Tubby C-terminal domain-like 77 376 IPR025659 -
Prci4g1209 378 Gene3D Tubby Protein; Chain A 85 378 IPR025659 -
Prci4g1209 378 Pfam Tub family 89 373 IPR000007 -
Prci4g1209 378 PANTHER TUBBY-RELATED 24 376 - -
Prci4g1209 378 SUPERFAMILY F-box domain 21 71 IPR036047 GO:0005515
Prci4g1209 378 PRINTS Tubby superfamily signature 143 159 IPR000007 -
Prci4g1209 378 PRINTS Tubby superfamily signature 335 354 IPR000007 -
Prci4g1209 378 PRINTS Tubby superfamily signature 160 184 IPR000007 -
Prci4g1209 378 PRINTS Tubby superfamily signature 206 233 IPR000007 -
Prci4g1209 378 PRINTS Tubby superfamily signature 356 378 IPR000007 -
Prci4g1209 378 PRINTS Tubby superfamily signature 307 323 IPR000007 -
Prci4g1209 378 PRINTS Tubby superfamily signature 289 306 IPR000007 -
Prci4g1209 378 Pfam F-box domain 28 73 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1209 Prci-Chr4 9453395 9457009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1209 6 378 TUB Transcription Factor Family AT2G47900 65.617 2.32e-170 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Prci4g1209 Tub 4e-103 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1209 K19600 - gmx:100815464 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g1209 4 9453395 9457009 Prci4g1209 4 9453395 9457009 ECH