Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1200 ATGACAATGAACGTCTTGGTTTTGGGAAGATGGGATACGGGAGAAGATGCAAGATTCGGGCTCCCTGCTGCAACGAACTGTACTCCTGCCGTCATTGTCATAACGAGGCTACGGTTGCTCAAGTTTGCACGAACTGTGGCGTCAAAATGGGAGAATATTTCTGCAACACATGCAAATTCTTTGATGCTGATACGGAGAAACTGTAGTTTCATTGTGACGATTGTGGAATCTGCAGAATTGGTGGTCGTGATAATTTTTTCCACTGCAATAGGGTCTTGCTATTCACTTGGTCTACTTGATAATCATATATGTGTGGAGGACTCCATGAGGCATCACTGTCCCATATGTTATGAGTACCTTTTTGATTCAGTGAAGGACACTGGCGTTGTGAAATGTGGTCACACAATGCACTGTGAATGTTTCAAAGAGATGATAAAACGTGAAAAGTATTGCTGCCCCATATGCTCCAAGTCAGCGATTGACATGTCCATGATCTGGAAGATGATTGATGAAGAGATTGAAGAAACTCCCATGCCTGAAGGTTATCGACACAGGAAGGTCTGGATACTGTGTAATGACTGTAATGATACAACCGAAGTGAACTTCCACATAGTTGGGCAAAAATGTGGGCACTGCAGCTCATACAATACTCGTGAAATTGCTCCAACTGTTCTTCCTCAATGA 684 0.4313 MTMNVLVLGRWDTGEDARFGLPAATNCTPAVIVITRLRLLKFARTVASKWENISATHANSLMLIRRNCSFIVTIVESAELVVVIIFSTAIGSCYSLGLLDNHICVEDSMRHHCPICYEYLFDSVKDTGVVKCGHTMHCECFKEMIKREKYCCPICSKSAIDMSMIWKMIDEEIEETPMPEGYRHRKVWILCNDCNDTTEVNFHIVGQKCGHCSSYNTREIAPTVLPQ 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1200 227 SUPERFAMILY RING/U-box 112 159 - -
Prci4g1200 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 185 IPR013083 -
Prci4g1200 227 ProSiteProfiles Zinc finger RING-type profile. 113 156 IPR001841 -
Prci4g1200 227 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 90 223 - -
Prci4g1200 227 Pfam Zinc-ribbon 160 218 IPR039512 -
Prci4g1200 227 Pfam Zinc finger, C3HC4 type (RING finger) 113 155 IPR018957 GO:0046872
Prci4g1200 227 Gene3D - 186 225 - -
Prci4g1200 227 SMART ring_2 113 155 IPR001841 -
Prci4g1200 227 CDD RING-H2_Pirh2-like 112 156 - -
Prci4g1200 227 FunFam RING finger and CHY zinc finger domain-containing protein 1 184 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1200 Prci-Chr4 9385289 9389191 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1200 96 226 C2H2 Transcription Factor Family AT3G18290 43.182 8.69e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1200 K10144 - qsu:112031935 258.455