Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1190 ATGGCCCGGGCAGCGAAGCCTCAGGTGTCTTCCGACGACCAGCTGTCGAACGGTTCGAGTTCCTCGGAGGATGAGCAGGTCAACGATCAGATCAACGATGAGGAGGATGAAGAGGAGCTGCAAGCCGTGGCTCGCTCCGCCAGCTCTGACGACGAAGATGCTGCCGATGACAATTCGCCGGATTCCGATGCAGATGCACCCATTGAAGATGGCGAGGAGGAGGAACAGGAAGGTAATGTCGATCCTGAAATTGCTAGGCGTGAAAAGGCCAGATTGAATGAAATGCAGAAGCTGAAGAAACGAAAGATTCAAGAGATGCTGGATGCGCAAAATGCTGCAATTGATGCTGATATGAACAACAAGGGGAAAGGTCGCTTGAAGTATCTTCTACAGCAAACTGAACTGTTTGCTCATTTTGCAAAAGGCGATCAATCATCTCAAAAGAAGTCCAAGGGAAGGGGTCGGCATGCGTCAAAAGTGACTGAAGAAGAAGAAGATGAAGAGTATCTTAAAGAAGAAGAAGATGGATTAGCAGGAAACACACGATTGGTGATGCAACCATCATGTATTCAAGGAAAGTTGAGGGATTACCAACTTGCTGGCCTAAACTGGCTTATTCGATTGTATGAGAATGGTATAAATGGAATTCTGGCAGATGAGATGGGGCTCGGTAAAACACTGCAAACTATCTCCTTATTGGGCTATTTGCATGAGTTTAGAGGAATAACTGGTCCTCACATGGTTGTTGCTCCAAAATCTACACTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTCTTGCGGGCAGTAAAATTCCTTGGCAATCCTGATGAAAGGAGACATATCAGAGAGGAATTATTAGTTGCTGGGAAGTTTGATGTGTGTGTTACCAGTTTTGAAATGGCCATCAAGGAGAAGTCTGCTTTGCGTCGTTTTAGTTGGCGCTACATAATTATAGATGAAGCCCACCGAATCAAGAATGAGAATTCCCTCCTTTCCAAAACAATGAGGCTCTATAATACAAACTATCGCCTCCTTATCACTGGCACACCACTGCAGAATAATCTTCATGAACTCTGGTCTCTTCTCAATTTTCTTCTTCCTGAAATATTTAGCTCTTCTGAAACTTTTGATGAGTGGTTTCAAATCTCTGGTGACAATGACCAGCAGGAGGTTGTTCAACAACTGCACAAGGTCCTACGGCCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAAAAGGGTTTGCCACCCAAAAAGGAGACCATTCTTAAAGTAGGCATGTCACAAATGCAGAAGCAGTATTATAGGGCCTTACTGCAGAAGGATCTTGAAGTTGTTAATGCTGGTGGAGAACGGAAACGTCTCCTGAATATAGCCATGCAACTGCGTAAATGTTGTAATCATCCATATCTTTTTCAAGGCGCTGAACCTGGTCCACCCTATACAACAGGGGACCATCTTATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAATTACTTCCAAAATTAAAAGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGACTGCTAGACATACTTGAAGATTATCTGATGTTTCGTGGATATCAATATTGTCGTATTGATGGAAATACTGGTGGAGAAGATCGTGATACCTCCATCGAGATTTTCAACAAACCTGGCAGTGAGAAATTTGTCTTCTTATTATCAACTCGGGCTGGAGGCCTTGGCATTAATCTTGCCACTGCTGATGTTGTCATTCTTTATGACAGTGATTGGAACCCACAAGTTGACTTGCAGGCTCAAGACCGTGCTCACAGAATTGGCCAAAAGAAAGAAGTCCAAGTTTTCCGATTCTGCACTGAGTATACGATTGAGGAGAAGGTCATTGAAAGAGCATACAAAAAGCTAGCTCTTGATGCTCTCGTGATTCAGCAAGGACGATTGGCAGAGCAGAAGACTGTAAATAAAGATGAGTTACTTCAGATGGTCAGATTTGGTGCTGAAATGGTTTTCAGTTCTAAGGATAGTACGATTACCGATGAGGATATTGACAGGATTATTGCTAAAGGAGAGGAAGCAACAGCTGAACTTGATGCCAAGATGAAGAAATTTACTGAAGATGCTATAAAATTTAAGATGGATGACACTGCTGAGTTGTATGATTTTGATGATGAGAAGGATGAGAATAAAGTTGATTTCAAAAAAATTGTAAGTGATAACTGGATCGAGCCACCAAAAAGAGAGCGGAAGCGCAACTACTCAGAATCTGAATATTTTAAGCAAACAATGCGCCAAGGTGGCCCTACTAAGCCGAAAGAGCCCCGTATTCCCCGGATGCCTCAGCTGCATGATTTCCAGTTCTTCAACACACACAGGCTGAGCGAGCTGTATGAAAAGGAAGTACGCTATCTCATGCAAACGCATCAGAAGAATCAGTTAAAAGACTCCATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCCTTAACTGCTGAAGAGCTGGATGAAAAGGAGCGCTTGCTGGAGGAGGGATTTTCTTCATGGAGCCGAAGGGATTTCAATACTTTCATCAGAGCCTGTGAAAAGTATGGCCGAAATGATATAAAGAGTATTGCTTCTGAGATGGAAGGAAAGTCAGAGGAGGAAGTTGAACGATATGCAAAGGTTTTCAGAGAAAGATATAAGGAGTTAAATGATTATGATAGAATTATCAAAAACATTGAAAGAGGGGAGGCTAGAATTTCTAGAAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGATCGATACAGGAATCCATGGCTAGAGTTGAAGATACAATATGGGCAAAACAAGGGGAAGTTATACAATGAAGAATGTGATAGATTCATGATTTGCATGGTTCACAAACTTGGTTATGGGAATTGGGATGAGTTGAAGGCGGCATTTCGAACATCACCTTTATTTAGATTTGATTGGTTTGTCAAGTCTCGCACGACACAGGAGCTCGCTAGGAGATGTGACACCCTCATTAGGTTGGTAGAGAAGGAAAACCAAGAATACGATGAGAGAGAGAGACAAGCTCGTAAAGAGAAGAAACTTGCTAAGAGCATGACCCCATCAAAACGAGGTTCAGCTAGACAGACTGAGAGTCCATTAACGCAGAAAAAGCGCAGACAGTTAACTATGGATGACTATGGAAAAAGGAGAAAATAA 3201 0.4246 MARAAKPQVSSDDQLSNGSSSSEDEQVNDQINDEEDEEELQAVARSASSDDEDAADDNSPDSDADAPIEDGEEEEQEGNVDPEIARREKARLNEMQKLKKRKIQEMLDAQNAAIDADMNNKGKGRLKYLLQQTELFAHFAKGDQSSQKKSKGRGRHASKVTEEEEDEEYLKEEEDGLAGNTRLVMQPSCIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRHIREELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSSETFDEWFQISGDNDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDTSIEIFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKVDFKKIVSDNWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTHRLSELYEKEVRYLMQTHQKNQLKDSIDVDEPEEVGDPLTAEELDEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKSEEEVERYAKVFRERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYRNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRGSARQTESPLTQKKRRQLTMDDYGKRRK 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1190 1066 MobiDBLite consensus disorder prediction 1047 1066 - -
Prci4g1190 1066 MobiDBLite consensus disorder prediction 53 79 - -
Prci4g1190 1066 Gene3D - 845 899 - -
Prci4g1190 1066 MobiDBLite consensus disorder prediction 144 164 - -
Prci4g1190 1066 FunFam ISWI chromatin-remodeling complex ATPase CHR11 746 844 - -
Prci4g1190 1066 Gene3D - 415 707 IPR027417 -
Prci4g1190 1066 CDD SF2_C_SNF 495 620 - -
Prci4g1190 1066 Pfam Helicase conserved C-terminal domain 497 609 IPR001650 -
Prci4g1190 1066 CDD DEXHc_SMARCA1_SMARCA5 191 411 IPR044754 GO:0005524
Prci4g1190 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 409 IPR027417 -
Prci4g1190 1066 Coils Coil 1002 1029 - -
Prci4g1190 1066 CDD SANT 848 889 IPR001005 -
Prci4g1190 1066 FunFam ISWI chromatin-remodeling complex ATPase CHR11 933 1036 - -
Prci4g1190 1066 Gene3D - 195 410 IPR038718 -
Prci4g1190 1066 FunFam Chromatin-remodeling complex ATPase 195 410 - -
Prci4g1190 1066 MobiDBLite consensus disorder prediction 1015 1033 - -
Prci4g1190 1066 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 845 899 - -
Prci4g1190 1066 Pfam SLIDE 902 1012 IPR015195 GO:0003677|GO:0005634|GO:0006338
Prci4g1190 1066 Pfam HAND 758 838 IPR015194 GO:0003677|GO:0006338|GO:0031491
Prci4g1190 1066 MobiDBLite consensus disorder prediction 9 26 - -
Prci4g1190 1066 MobiDBLite consensus disorder prediction 1 92 - -
Prci4g1190 1066 SMART ultradead3 190 382 IPR014001 -
Prci4g1190 1066 SMART helicmild6 525 609 IPR001650 -
Prci4g1190 1066 SUPERFAMILY Homeodomain-like 900 1022 IPR009057 -
Prci4g1190 1066 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 116 1053 - -
Prci4g1190 1066 Gene3D ISWI, HAND domain 746 844 IPR036306 GO:0003677|GO:0006338|GO:0031491
Prci4g1190 1066 ProSiteProfiles SANT domain profile. 844 896 IPR017884 -
Prci4g1190 1066 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 757 847 IPR036306 GO:0003677|GO:0006338|GO:0031491
Prci4g1190 1066 SMART sant 947 1008 IPR001005 -
Prci4g1190 1066 SMART sant 845 894 IPR001005 -
Prci4g1190 1066 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 499 650 IPR001650 -
Prci4g1190 1066 FunFam ISWI chromatin-remodeling complex ATPase CHR11 415 707 - -
Prci4g1190 1066 Pfam SNF2-related domain 207 474 IPR000330 GO:0005524|GO:0140658
Prci4g1190 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 692 IPR027417 -
Prci4g1190 1066 Gene3D iswi atpase 900 932 - -
Prci4g1190 1066 Gene3D - 933 1036 - -
Prci4g1190 1066 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 206 371 IPR014001 -
Prci4g1190 1066 Coils Coil 85 112 - -
Prci4g1190 1066 SUPERFAMILY Homeodomain-like 848 898 IPR009057 -
Prci4g1190 1066 MobiDBLite consensus disorder prediction 141 173 - -
Prci4g1190 1066 MobiDBLite consensus disorder prediction 1015 1066 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1190 Prci-Chr4 9335790 9344619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1190 186 636 RAD5 or RAD16-like Gene Family AT1G02670 26.542 1.80e-41 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci4g1190 SNF2_N 3.5e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1190 K11654 - rcu:8262399 1879.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g1190 4 9335790 9344619 Prci4g1190 4 9335790 9344619 ECH