Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1173 ATGGAACGGTACGGCCGGGCTAGCGGCGAGTCGCAGTCCGATCCATCGCTGGAATGGACTGGAACCGGAGGCGAAACGGGTCTTGAAGAATCTGTGAGGCAATTGGGATTGGTTGGTGGGGAATCGTATCCACAACGGCCCGATGAGGCTGATTGTAACTACTATTTGAAGACAGGGTTTTGTGGGTATGGCTCGCGGTGTCGGTTCAATCATCCCCCTGACCGTGGCCCGGTTTTTGGAGCTTCGAGGACTGGCATGGAGTATCCAGAGCGAGTAGGCCAGCCTGTATGTCAGTATTATATGAGGACAGGATCTTGCAAATTCGGTGCTTCATGTAAGTACCACCATCCTAGGCAGGGAGGAGGCGTTGCTCTTGTATCACTTAATTGTTATGGATACCCATTTCGACCGGATGAGAAAGAGTGTTCGTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCACAGCCTGCTGGTGTTCAAGTTCCTGCACCTCTATCAGTTCCCCAAGTCTCTTCTCTACCTGTCCGAGTACCTTCATCGTTCTATCCAACTGTGCAGCCTCCATCTGGTCCTTCATCACAACAATATGGTGTAATGGTTGCAAGACCACCTCTACTACCAGGGTCATTAGTCCAAAGTCCTTATGGGCCTGTGGTAATGTCCCATGTCCCTTTTTCAGGTTGGAATCCTTATCAGGCTCCTACAAGCCCTGCAATTCCATCTAGTACTCCATCAAATGTTGGTTCAACACACCTTTATGGGAATACTCAGCTACCTTCATCAGCACCTGCCTATACTTCACCTTATCAACCTGCAGGTTCCGCATTTGGTCCCTCAAACACTAGTCAGAGAGAACAACATTCATTACCAGAAAGACCAGGTCAGCCAGAATGTCAGCATTACATGAGAACGGGAGAGTGTAGATTTGGTCCTTCCTGTAGGTATCATCATCCACCTGAATTGGTTGTACCAAATGTCAATGTGGTCCTTAGTCCTGAGGGTCTTCCTCTGCGCCCGGGTGCACCGCCTTGCACTCACTATGTGCAGCGAGGAGTATGCAAGTTTGGTCCTGCATGCAGGTTTGATCATTCTATGGGAACATTGACTTACAGTCCATCTGCTTCTTCTCTTGTTAATATGCCAGTTGTATCCATTCCTGTGGGTTCTTCCATCAGTACTCGTCCTCCATCGTCCTCATCATCAGAGTTGCAGCCTGAACGTAACCCTGGTTCTAGCCGGGAGCCTGGATCATTCAGAATTTCTTCTTCAATGAGCACAGCCACTGGATCAGTTGGCTTGGCTTTGTCAACTAGTGGAAACGTTTCTGAATCAAGTGCTCAAACATCCGCCCAAAGTTCTGTTCCGGTAGCAACTACGACTATCACAACAACCAGCACTGTCTCTCATGCCCCAAGCTAA 1443 0.4858 MERYGRASGESQSDPSLEWTGTGGETGLEESVRQLGLVGGESYPQRPDEADCNYYLKTGFCGYGSRCRFNHPPDRGPVFGASRTGMEYPERVGQPVCQYYMRTGSCKFGASCKYHHPRQGGGVALVSLNCYGYPFRPDEKECSYYVKTGQCKFGATCKFHHPQPAGVQVPAPLSVPQVSSLPVRVPSSFYPTVQPPSGPSSQQYGVMVARPPLLPGSLVQSPYGPVVMSHVPFSGWNPYQAPTSPAIPSSTPSNVGSTHLYGNTQLPSSAPAYTSPYQPAGSAFGPSNTSQREQHSLPERPGQPECQHYMRTGECRFGPSCRYHHPPELVVPNVNVVLSPEGLPLRPGAPPCTHYVQRGVCKFGPACRFDHSMGTLTYSPSASSLVNMPVVSIPVGSSISTRPPSSSSSELQPERNPGSSREPGSFRISSSMSTATGSVGLALSTSGNVSESSAQTSAQSSVPVATTTITTTSTVSHAPS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1173 480 SUPERFAMILY CCCH zinc finger 304 327 IPR036855 GO:0046872
Prci4g1173 480 ProSiteProfiles Zinc finger C3H1-type profile. 346 374 IPR000571 GO:0046872
Prci4g1173 480 SUPERFAMILY CCCH zinc finger 92 118 IPR036855 GO:0046872
Prci4g1173 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Prci4g1173 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Prci4g1173 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 327 IPR000571 GO:0046872
Prci4g1173 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 163 IPR000571 GO:0046872
Prci4g1173 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 349 373 IPR000571 GO:0046872
Prci4g1173 480 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Prci4g1173 480 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Prci4g1173 480 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Prci4g1173 480 MobiDBLite consensus disorder prediction 1 31 - -
Prci4g1173 480 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Prci4g1173 480 MobiDBLite consensus disorder prediction 244 297 - -
Prci4g1173 480 MobiDBLite consensus disorder prediction 397 480 - -
Prci4g1173 480 Gene3D - 89 171 - -
Prci4g1173 480 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Prci4g1173 480 SMART c3hfinal6 346 373 IPR000571 GO:0046872
Prci4g1173 480 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Prci4g1173 480 SMART c3hfinal6 138 163 IPR000571 GO:0046872
Prci4g1173 480 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Prci4g1173 480 Gene3D - 28 76 - -
Prci4g1173 480 MobiDBLite consensus disorder prediction 244 305 - -
Prci4g1173 480 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Prci4g1173 480 Gene3D - 289 375 - -
Prci4g1173 480 SUPERFAMILY CCCH zinc finger 136 164 IPR036855 GO:0046872
Prci4g1173 480 PANTHER PROTEIN PHOSPHATASE RELATED 37 408 - -
Prci4g1173 480 SUPERFAMILY CCCH zinc finger 350 376 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1173 Prci-Chr4 9204671 9210341 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1173 1 439 C2H2 Transcription Factor Family AT5G18550 55.724 3.14e-144 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci4g1173 zf-CCCH 6.1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1173 - - gmx:100789405 646.736