Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1172 ATGGAACGGTACGGCCGGGCTAGCGGCGAGTCGCAGTCCGATCCATCGCTGGAATGGACTGGAACCGGAGGCGAAACGGGTCTTGAAGAATCTGTGAGGCAATTGGGATTGGTTGGTGGGGAATCGTATCCACAACGGCCCGATGAGGCTGATTGTAACTACTATTTGAAGACAGGGTTTTGTGGGTATGGCTCGCGGTGTCGGTTCAATCATCCCCCTGACCGTGGCCCGGTTTTTGGAGCTTCGAGGACTGGCATGGAGTATCCAGAGCGAGTAGGCCAGCCTGTATGTCAGTATTATATGAGGACAGGATCTTGCAAATTCGGTGCTTCATGTAAGTACCACCATCCTAGGCAGGGAGGAGGCGTTGCTCTTGTATCACTTAATTGTTATGGATACCCATTTCGACCGGATGAGAAAGAGTGTTCGTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCACAGCCTGCTGGTGTTCAAGTTCCTGCACCTCTATCAGTTCCCCAAGTCTCTTCTCTACCTGTCCGAGTACCTTCATCGTTCTATCCAACTGTGCAGCCTCCATCTGGTCCTTCATCACAACAATATGGTGTAATGGTTGCAAGACCACCTCTACTACCAGGGTCATTAGTCCAAAGTCCTTATGGGCCTGTGGTAATGTCCCATGTCCCTTTTTCAGGTTGGAATCCTTATCAGGCTCCTACAAGCCCTGCAATTCCATCTAGTACTCCATCAAATGTTGGTTCAACACACCTTTATGGGAATACTCAGCTACCTTCATCAGCACCTGCCTATACTTCACCTTATCAACCTGCAGGTTCCGCATTTGGTCCCTCAAACACTAGTCAGAGAGAACAACATTCATTACCAGAAAGACCAGGTCAGCCAGAATGTCAGCATTACATGAGAACGGGAGAGTGTAGATTTGGTCCTTCCTGTAGGTATCATCATCCACCTGAATTGGTTGTACCAAATGTCAATGTGGTCCTTAGTCCTGAGGGTCTTCCTCTGCGCCCGACTGTCAGAGTCTAA 1056 0.4867 MERYGRASGESQSDPSLEWTGTGGETGLEESVRQLGLVGGESYPQRPDEADCNYYLKTGFCGYGSRCRFNHPPDRGPVFGASRTGMEYPERVGQPVCQYYMRTGSCKFGASCKYHHPRQGGGVALVSLNCYGYPFRPDEKECSYYVKTGQCKFGATCKFHHPQPAGVQVPAPLSVPQVSSLPVRVPSSFYPTVQPPSGPSSQQYGVMVARPPLLPGSLVQSPYGPVVMSHVPFSGWNPYQAPTSPAIPSSTPSNVGSTHLYGNTQLPSSAPAYTSPYQPAGSAFGPSNTSQREQHSLPERPGQPECQHYMRTGECRFGPSCRYHHPPELVVPNVNVVLSPEGLPLRPTVRV 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1172 351 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Prci4g1172 351 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 327 IPR000571 GO:0046872
Prci4g1172 351 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 163 IPR000571 GO:0046872
Prci4g1172 351 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Prci4g1172 351 MobiDBLite consensus disorder prediction 244 306 - -
Prci4g1172 351 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Prci4g1172 351 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Prci4g1172 351 SMART c3hfinal6 138 163 IPR000571 GO:0046872
Prci4g1172 351 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Prci4g1172 351 Gene3D - 289 334 - -
Prci4g1172 351 Gene3D - 43 121 - -
Prci4g1172 351 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Prci4g1172 351 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Prci4g1172 351 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Prci4g1172 351 SUPERFAMILY CCCH zinc finger 92 118 IPR036855 GO:0046872
Prci4g1172 351 Gene3D - 124 169 - -
Prci4g1172 351 MobiDBLite consensus disorder prediction 1 31 - -
Prci4g1172 351 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Prci4g1172 351 MobiDBLite consensus disorder prediction 244 297 - -
Prci4g1172 351 PANTHER PROTEIN PHOSPHATASE RELATED 36 348 - -
Prci4g1172 351 SUPERFAMILY CCCH zinc finger 304 327 IPR036855 GO:0046872
Prci4g1172 351 SUPERFAMILY CCCH zinc finger 136 164 IPR036855 GO:0046872
Prci4g1172 351 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1172 Prci-Chr4 9204667 9209384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1172 1 347 C2H2 Transcription Factor Family AT5G18550 57.851 6.74e-124 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci4g1172 zf-CCCH 2.3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1172 - - gmx:100789405 510.76