Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1160 ATGGTGGATAACCTCGGAGGCAGCAGCTCTTCATCAATCAATGTTGTTGACAATGGTGGGATGATAAAGGAACAAGACAGGTTGTTGCCGATAGCCAATGTTGGTCGGATTATGAAGCAAATTCTTCCACAGAACGCCAAGATCTCGAAGGAAGCGAAGGAGACGATGCAGGAATGCGCGTCGGAGTTCATAAGCTTTGTCACCAGCGAGGCCTCTGATAAGTGCAGAAAGGAGAGGAGGAAGACCGTTAATGGCGACGACATATGCTGGGCCTTAAAAGCCCTAGGGTTTGATGATTATGCAGAGCCTCTTCAAAGGTACTTGTATAGATATAGAGAGCTTGAGGTAGATAATCGAGCTAATAACCCTAATCATCGTCAAGATGGAGAATTAGAACCTTGA 402 0.4577 MVDNLGGSSSSSINVVDNGGMIKEQDRLLPIANVGRIMKQILPQNAKISKEAKETMQECASEFISFVTSEASDKCRKERRKTVNGDDICWALKALGFDDYAEPLQRYLYRYRELEVDNRANNPNHRQDGELEP 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1160 133 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Prci4g1160 133 Gene3D Histone, subunit A 20 132 IPR009072 GO:0046982
Prci4g1160 133 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 121 IPR027113 GO:0001228|GO:0006355|GO:0016602
Prci4g1160 133 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Prci4g1160 133 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Prci4g1160 133 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Prci4g1160 133 FunFam Nuclear transcription factor Y subunit B-6 17 131 - -
Prci4g1160 133 SUPERFAMILY Histone-fold 25 128 IPR009072 GO:0046982
Prci4g1160 133 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1160 Prci-Chr4 9024228 9024895 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1160 21 129 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.229 1.40e-57 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Prci4g1160 CBFD_NFYB_HMF 2.8e-27 CL0012