Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1159 ATGGTGGATAACCTCGGAGGCAGCAGCTCTTCATCAATCAATGTTGTTGACAATGGTGGGATGATAAAGGAACAAGACAGGTTGTTGCCGATAGCCAATGTTGGTCGGATTATGAAGCAAATTCTTCCACAGAACGCCAAGATCTCGAAGGAAGCGAAGGAGACGATGCAGGAATGCGCGTCGGAGTTCATAAGCTTTGTCACCAGCGAGGCCTCTGATAAGTGCAGAAAGGAGAGGAGGAAGACCGTTAATGGCGACGACATATGCTGGGCCTTAAAAGCCCTAGGGTTTGATGATTATGCAGAGCCTCTTCAAAGGCCAATGACATGA 330 0.4818 MVDNLGGSSSSSINVVDNGGMIKEQDRLLPIANVGRIMKQILPQNAKISKEAKETMQECASEFISFVTSEASDKCRKERRKTVNGDDICWALKALGFDDYAEPLQRPMT 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1159 109 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 106 IPR027113 GO:0001228|GO:0006355|GO:0016602
Prci4g1159 109 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Prci4g1159 109 Gene3D Histone, subunit A 20 109 IPR009072 GO:0046982
Prci4g1159 109 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Prci4g1159 109 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Prci4g1159 109 PRINTS CCAAT-binding transcription factor subunit A signature 94 109 - -
Prci4g1159 109 SUPERFAMILY Histone-fold 25 106 IPR009072 GO:0046982
Prci4g1159 109 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1159 Prci-Chr4 9024228 9025212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1159 21 106 CCAAT-HAP3 Transcription Factor Family AT2G47810 82.558 7.03e-51 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Prci4g1159 CBFD_NFYB_HMF 1.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1159 K08065 - gmx:100794902 179.104