Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1107 ATGTCTAACGGTGACCATGAAAGGAAGAAGAAGATCGCCGTTATTTCGGTATCTGGGATCCTTCTAGTGGCTATGGTGGCGGCCGTGGGCGTCGGTTTATCTGGCACCGGCGAGGAAGCCTACGATGCGGTCGCGTCCGCGGAGGATGACGGTGGTGAGAAGAAACAGATTTCGGCGAGTCAAAAGGACGTGGAAATGCTTTGCAGCTCAGCCCAATACAAAGAAACCTGCAAGCACAGCCTCGCAAAAGCAAACAACGGCACCACCGACGTTAAAGAACTCATCAAAACGGCGTTCCACGCCGCCGCCAAGGAGTTCAAGAAGTTCATCGACAATTCCACCCTCTTCGACGAGCTGGCCAAGGACAACATGACCAAACAGGCTATGGAGATCTGCCACGAGGTGCTGGACTACGCCATAGACGACGTAAAGAACTCGATCAATAGCGTGGAACAGTTCGATATAAGCAAGCTAAGCGACTACGCCTATGACGTTAAGGTGTGGCTCGGAGGCACCATTTCCCACCAACGCACCTGCTTGGACGGCTTCGAGAACACCACCACTCACGCAGCCGAGACCATGGCCAATGTGTTGAACACCTCCCTGGAGCTCAGCATGAACGCTTTGGACATTATTTCTGGCCTCTCCGATGTGGCCGAAGCCTTCGGATTGGCCGGCCTCGGTGGCCAGCAAGATCATGGCACTAACAACACCTCCAGTCGGAAGCTTCTCGAGAGTTTGCCGTCCTGGGTAGGTGATAGCCAACACCGTCATCTCCTCGCCGCGGCAGCTGCCGGTGCTTCCAACGTCAAGCCCAATGCTGTTGTGGCTCAAGATGGATCCGGGCAGTTCAAAACACTAACAGACGCTATTAATTCTGTTCCAAAGAATAATAAGAAACCCTATGTGATTTACGTGAAGGCCGGCATATATAAGGAGATTGTGAAGATTCCCAAGCAATCCAGCTATATCACTATCGTCGGAGATGGTCCCACCCTCACCAGATTCACCGGCGGTCTCAACTTTGCCGACGGCGTCCAGACTTACAACACCGCAACATTCGGCGTGAATGCTCCTTACTTCACGGCCATGCACGTAGGGTTTGAGAACTCCGCCGGAGCAATTAAGCATCAAGCCGTGGCGCTCCGAGTGACAGCAGATAAAGCTGTCTTCTACAACTGCCACATGGACGGATACCAAGACACCCTCTACGCGCAGTCTCACCGCCAGTTCTACCGAGACTGCGTCATCTCCGGCACAATCGACTTCATCTTTGGCGACGCCGACATGGTCTTCCAGAACTGCACGCTGGTCGTGAGGCCACCTTTAAGCAACCAGAACTGCATCGTCTCAGCCAGTGGCCGCAACGTGATCAACAGCCCCAGTGCCATGGTGTTCCAGAGCTGCCGCTTCACTGCCGACACGCTCTACCTCTCCGATCCGGCGAAGAAGCCGGCATACCTAGGACGACCGTGGAGGGCATACGCCAAGGTGGTGATCATGGATTCTGAGATCGACGGAATCTTCGCTCCCGAAGGTTACTTGTCGTGGATGGGAAGCATCTATCACTTGACCAGCATCTTCAATGAGTATAACAACAAGGGTCCCGGCGCCGATACCTCTCATAGAGTGAAATGGCCCGGTGTAAAGGTGATCACTGCTTCACAAGCTGCAAATTTCTATCCTCGCAAGTTCTTTGAATTTCGCAATGCAACAACAGCTGAAGACGATTCCTGGATCTCCGCGTCCGGGATTCCGTATTCCGTTGGCCCCATGGCCGTTCCTAATTGA 1791 0.536 MSNGDHERKKKIAVISVSGILLVAMVAAVGVGLSGTGEEAYDAVASAEDDGGEKKQISASQKDVEMLCSSAQYKETCKHSLAKANNGTTDVKELIKTAFHAAAKEFKKFIDNSTLFDELAKDNMTKQAMEICHEVLDYAIDDVKNSINSVEQFDISKLSDYAYDVKVWLGGTISHQRTCLDGFENTTTHAAETMANVLNTSLELSMNALDIISGLSDVAEAFGLAGLGGQQDHGTNNTSSRKLLESLPSWVGDSQHRHLLAAAAAGASNVKPNAVVAQDGSGQFKTLTDAINSVPKNNKKPYVIYVKAGIYKEIVKIPKQSSYITIVGDGPTLTRFTGGLNFADGVQTYNTATFGVNAPYFTAMHVGFENSAGAIKHQAVALRVTADKAVFYNCHMDGYQDTLYAQSHRQFYRDCVISGTIDFIFGDADMVFQNCTLVVRPPLSNQNCIVSASGRNVINSPSAMVFQSCRFTADTLYLSDPAKKPAYLGRPWRAYAKVVIMDSEIDGIFAPEGYLSWMGSIYHLTSIFNEYNNKGPGADTSHRVKWPGVKVITASQAANFYPRKFFEFRNATTAEDDSWISASGIPYSVGPMAVPN 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1107 596 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 215 IPR035513 -
Prci4g1107 596 ProSitePatterns Pectinesterase signature 2. 417 426 IPR033131 -
Prci4g1107 596 Gene3D - 266 590 IPR012334 -
Prci4g1107 596 ProSitePatterns Pectinesterase signature 1. 298 317 IPR018040 -
Prci4g1107 596 Pfam Plant invertase/pectin methylesterase inhibitor 64 211 IPR006501 GO:0004857
Prci4g1107 596 PANTHER PECTINESTERASE 17 581 - -
Prci4g1107 596 SMART PMEI_2 59 211 IPR006501 GO:0004857
Prci4g1107 596 FunFam Pectinesterase 4 270 591 - -
Prci4g1107 596 Pfam Pectinesterase 273 566 IPR000070 GO:0030599|GO:0042545
Prci4g1107 596 FunFam Pectinesterase 60 216 - -
Prci4g1107 596 NCBIfam pectinesterase inhibitor domain 59 215 IPR006501 GO:0004857
Prci4g1107 596 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 216 IPR035513 -
Prci4g1107 596 SUPERFAMILY Pectin lyase-like 270 589 IPR011050 -
Prci4g1107 596 CDD PMEI-like_3 67 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1107 Prci-Chr4 8539542 8541869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1107 5 593 Carbohydrate Esterase AT3G05610 42.203 1.90e-174 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1107 K01051 - gmx:100820068 666.381