Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1073 ATGAATCTGAGCAACGCCAAGGGATCCATGTCAACGGCCTGTTCTAGCACCGCTAGGAAATCCGGTGGGGACGGCGCCGGTGGTGACCAGTTCCCGGCTGGGTTGCGAGTGCTGGTGGTCGACGATGATCCCACGTGCCTCATGATCCTCGAGAGGATGCTTCGTACTTGCCTCTACGAAGTAACCAAATGCAATCGAGCTGAAGTAGCGTTGTCTCTTCTGAGGGAGAACAAAAACGGGTTCGACATAGTTATAAGTGATGTTCATATGCCAGACATGGATGGCTTTAAGCTTTTAGAGCACATAGGATTGGAGATGGACCTTCCAGTTATTATGATGTCAGCAGATGATGGAAAAAATGTTGTTATGAAAGGTGTAACACACGGTGCTTGTGATTATCTAATAAAACCTGTACGCATTGAGGCTTTGAAGAATATATGGCAGCACGTGGTTCGAAAAAGAAAGAATGAGTGGAAGGATTTGGAGCAATCCTATAGTGCAGAAGAAGGAGATCGACAGCAAAAGGCATCAGACGAAGCTGATTACTCGTCCTCAGCAAATGAAGGAAATTGGAGAAATGTTAAGAAGAAGAGAGATGAGGAGGAAGAAGAAGAGGAGAAGGATGATACTTCCACATTAAAGAAGCCACGCGTTGTTTGGTCTGTTGAGCTCCATCAACAGTTTGTGGCAGCTGTGAATCAACTGGGAATTGACAAGGCTGTTCCCAAAAAAATTCTAGAATTGATGAATGTTCCTGGGCTCACCAGAGAAAATGTTGCTAGCCATCTCCAGAAATACCGCCTGTATCTAAGAAGACTCAGTGGGGTTTCTCAGCACCAGAGTAACATGAACAACTCTTTCATCAATCCACAGGAAGCAAGCTTTGGAACAATGTCAGCATTTAATGGAATTGATCTGCAAGCTCTTGCTGCTGCCGGCCAGCTTCCAGCGCAAAGTCTGGCAGCACTTCAAGCAGCAGGACTTGGTAGATCAACTGCTAAAGTTGGAGTATCTGTGCCCCTTGTTGATGAAAGGAACCTTTTCAGTTTTGAAAACCCCAGATTAAGATTTGGAGATGGTCAACAGCAGCACTTGAACAGTACTAAACCGACAAACTTACTTCATGGAATCCCCACCAACATGGAGCCAAGGCAGCTTGCCAATTTGCACCAATCAACACAATCCCTTGCTGGCATGAATGTGCGGGTCAATGCATCTGCTGCACAGAGCAACTCTTTATTGATGCCAATGGCTCAATCTCAACCAAGAGGTCAGATGCTCAGTGAAAATACTGCTTCACATATTCCTAGACTTCCATTATCTGTTGGGCAGCCTTCTGTACCAAACGGAATTTCTAATGCCGCTCTGGGAAGAAATGGGATTGCTGGTAATAACAGAGGAGCTGCTTATAATCCAATTCCGCAAACTTCTTCAATGCCAAGTGTTCCTGTGAACCAAACTACAGAAATGTCTGCCAGCAGTTTCCCACTCGGAAGCACACGAGGTATATCCAATATTTCACCAAAAGGCGCATTTCAAGAGGAAGATACTTCAGGAATCAAAGGATCTGGGGGATTTGTGCCAAGTTATGATATTTTCGATGAACTGCACCAGCAAAAGTCCCATGCTTGGGGACAAAATATGGGCCTCACATATGATACCTCTCAACATGCAAATGCTTTACACGGTAACATCGATGTCTTGCCATCAGTTATAGTCCATCAGAGCTTTTCTTCCTCCACCCAACAGACTGGACAGAATAGAGATTCTACTCTGATTGGAAAAGCCGTGTACTCCCAAGGAAACGGTTTGGAACAAGGAAATCTCCAAAATATTGATCAAAACCTCCATCCACTTGTTGAAAATTCTGCAAGGGTTAAGACTGAAATAATTTCTGACACAAACTCTCATTCCAACTTCCCTGGGCATTATGGGCAGGATGATCTTATGAGTGCACTTCTGAAACAGCAAGAAAGCATTGGGGCAGCTGAGATTGAATTTGACTTTGATGGATATTCGATGGACAACATTCCTGTCTAG 2040 0.4461 MNLSNAKGSMSTACSSTARKSGGDGAGGDQFPAGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEVALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSYSAEEGDRQQKASDEADYSSSANEGNWRNVKKKRDEEEEEEEKDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQSNMNNSFINPQEASFGTMSAFNGIDLQALAAAGQLPAQSLAALQAAGLGRSTAKVGVSVPLVDERNLFSFENPRLRFGDGQQQHLNSTKPTNLLHGIPTNMEPRQLANLHQSTQSLAGMNVRVNASAAQSNSLLMPMAQSQPRGQMLSENTASHIPRLPLSVGQPSVPNGISNAALGRNGIAGNNRGAAYNPIPQTSSMPSVPVNQTTEMSASSFPLGSTRGISNISPKGAFQEEDTSGIKGSGGFVPSYDIFDELHQQKSHAWGQNMGLTYDTSQHANALHGNIDVLPSVIVHQSFSSSTQQTGQNRDSTLIGKAVYSQGNGLEQGNLQNIDQNLHPLVENSARVKTEIISDTNSHSNFPGHYGQDDLMSALLKQQESIGAAEIEFDFDGYSMDNIPV 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1073 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 271 IPR017930 -
Prci4g1073 679 SUPERFAMILY Homeodomain-like 212 272 IPR009057 -
Prci4g1073 679 FunFam Two-component response regulator 211 274 - -
Prci4g1073 679 Pfam Myb-like DNA-binding domain 217 267 IPR001005 -
Prci4g1073 679 SUPERFAMILY CheY-like 34 158 IPR011006 -
Prci4g1073 679 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 318 IPR045279 GO:0009736
Prci4g1073 679 MobiDBLite consensus disorder prediction 1 19 - -
Prci4g1073 679 SMART REC_2 35 147 IPR001789 GO:0000160
Prci4g1073 679 FunFam Two-component response regulator 35 172 - -
Prci4g1073 679 PIRSF RR_ARR_type-B 12 669 IPR017053 GO:0003677|GO:0003700|GO:0009736
Prci4g1073 679 MobiDBLite consensus disorder prediction 164 178 - -
Prci4g1073 679 MobiDBLite consensus disorder prediction 164 212 - -
Prci4g1073 679 Gene3D - 35 173 - -
Prci4g1073 679 Gene3D - 212 274 - -
Prci4g1073 679 Pfam Response regulator receiver domain 37 145 IPR001789 GO:0000160
Prci4g1073 679 MobiDBLite consensus disorder prediction 1 25 - -
Prci4g1073 679 CDD REC_typeB_ARR-like 37 151 - -
Prci4g1073 679 MobiDBLite consensus disorder prediction 191 212 - -
Prci4g1073 679 NCBIfam myb-like DNA-binding domain, SHAQKYF class 215 268 IPR006447 GO:0003677
Prci4g1073 679 ProSiteProfiles Response regulatory domain profile. 36 151 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1073 Prci-Chr4 8213369 8217538 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1073 69 679 Response Regulator Gene Family AT3G16857 50.076 3.04e-179 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Prci4g1073 Response_reg 9.2e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1073 - K14491 gmx:100814930 1012.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g1073 4 8213369 8217538 Prci4g1073 4 8213369 8217538 ECH