Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1072 ATGAATCTGAGCAACGCCAAGGGATCCATGTCAACGGCCTGTTCTAGCACCGCTAGGAAATCCGGTGGGGACGGCGCCGGTGGTGACCAGTTCCCGGCTGGGTTGCGAGTGCTGGTGGTCGACGATGATCCCACGTGCCTCATGATCCTCGAGAGGATGCTTCGTACTTGCCTCTACGAAGTAACCAAATGCAATCGAGCTGAAGTAGCGTTGTCTCTTCTGAGGGAGAACAAAAACGGGTTCGACATAGTTATAAGTGATGTTCATATGCCAGACATGGATGGCTTTAAGCTTTTAGAGCACATAGGATTGGAGATGGACCTTCCAGTTATTATGATGTCAGCAGATGATGGAAAAAATGTTGTTATGAAAGGTGTAACACACGGTGCTTGTGATTATCTAATAAAACCTGTACGCATTGAGGCTTTGAAGAATATATGGCAGCACGTGGTTCGAAAAAGAAAGAATGAGTGGAAGGATTTGGAGCAATCCTATAGTGCAGAAGAAGGAGATCGACAGCAAAAGGCATCAGACGAAGCTGATTACTCGTCCTCAGCAAATGAAGGAAATTGGAGAAATGTTAAGAAGAAGAGAGATGAGGAGGAAGAAGAAGAGGAGAAGGATGATACTTCCACATTAAAGAAGCCACGCGTTGTTTGGTCTGTTGAGCTCCATCAACAGTTTGTGGCAGCTGTGAATCAACTGGGAATTGACAAGGCTGTTCCCAAAAAAATTCTAGAATTGATGAATGTTCCTGGGCTCACCAGAGAAAATGTTGCTAGCCATCTCCAGAAATACCGCCTGTATCTAAGAAGACTCAGTGGGGTTTCTCAGCACCAGAGTAACATGAACAACTCTTTCATCAATCCACAGGAAGCAAGCTTTGGAACAATGTCAGCATTTAATGGAATTGATCTGCAAGCTCTTGCTGCTGCCGGCCAGCTTCCAGCGCAAAGTCTGGCAGCACTTCAAGCAGCAGGACTTGGTAGATCAACTGCTAAAGTTGGAGTATCTGTGCCCCTTGTTGATGAAAGGAACCTTTTCAGTTTTGAAAACCCCAGATTAAGATTTGGAGATGGTCAACAGCAGCACTTGAACAGTACTAAACCGACAAACTTACTTCATGGAATCCCCACCAACATGGAGCCAAGGCAGCTTGCCAATTTGCACCAATCAACACAATCCCTTGCTGGCATGAATGTGCGGGTCAATGCATCTGCTGCACAGAGCAACTCTTTATTGATGCCAATGGCTCAATCTCAACCAAGAGGTCAGATGCTCAGTGAAAATACTGCTTCACATATTCCTAGACTTCCATTATCTGTTGGGCAGCCTTCTGTACCAAACGGAATTTCTAATGCCGCTCTGGGAAGAAATGGGATTGCTGGTAATAACAGAGGAGCTGCTTATAATCCAATTCCGCAAACTTCTTCAATGCCAAGTGTTCCTGTGAACCAAACTACAGAAATGTCTGCCAGCAGTTTCCCACTCGGAAGCACACGAGGTATATCCAATATTTCACCAAAAGGCGCATTTCAAGAGGAAGATACTTCAGGAATCAAAGGATCTGGGGGATTTGTGCCAAGTTATGATATTTTCGATGAACTGCACCAGCAAAAGTCCCATGCTTGGGGACAAAATATGGGCCTCACATATGATACCTCTCAACATGCAAATGCTTTACACGGTAACATCGATGTCTTGCCATCAGTTATAGTCCATCAGAGCTTTTCTTCCTCCACCCAACAGACTGGACAGAATAGAGATTCTACTCTGATTGGAAAAGCCGTGTACTCCCAAGGAAACGGTTTGGAACAAGGAAATCTCCAAAATATTGATCAAAACCTCCATCCACTTGTTGAAAATTCTGCAAGGGTTAAGACTGAAATAATTTCTGACACAAACTCTCATTCCAACTTCCCTGGGCATTATGGGCAGGATGATCTTATGAGTGCACTTCTGAAACAGCAGCAAGAAAGCATTGGGGCAGCTGAGATTGAATTTGACTTTGATGGATATTCGATGGACAACATTCCTGTCTAG 2043 0.4464 MNLSNAKGSMSTACSSTARKSGGDGAGGDQFPAGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEVALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSYSAEEGDRQQKASDEADYSSSANEGNWRNVKKKRDEEEEEEEKDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQSNMNNSFINPQEASFGTMSAFNGIDLQALAAAGQLPAQSLAALQAAGLGRSTAKVGVSVPLVDERNLFSFENPRLRFGDGQQQHLNSTKPTNLLHGIPTNMEPRQLANLHQSTQSLAGMNVRVNASAAQSNSLLMPMAQSQPRGQMLSENTASHIPRLPLSVGQPSVPNGISNAALGRNGIAGNNRGAAYNPIPQTSSMPSVPVNQTTEMSASSFPLGSTRGISNISPKGAFQEEDTSGIKGSGGFVPSYDIFDELHQQKSHAWGQNMGLTYDTSQHANALHGNIDVLPSVIVHQSFSSSTQQTGQNRDSTLIGKAVYSQGNGLEQGNLQNIDQNLHPLVENSARVKTEIISDTNSHSNFPGHYGQDDLMSALLKQQQESIGAAEIEFDFDGYSMDNIPV 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1072 680 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 271 IPR017930 -
Prci4g1072 680 SUPERFAMILY Homeodomain-like 212 272 IPR009057 -
Prci4g1072 680 FunFam Two-component response regulator 211 274 - -
Prci4g1072 680 Pfam Myb-like DNA-binding domain 217 267 IPR001005 -
Prci4g1072 680 SUPERFAMILY CheY-like 34 158 IPR011006 -
Prci4g1072 680 MobiDBLite consensus disorder prediction 1 19 - -
Prci4g1072 680 SMART REC_2 35 147 IPR001789 GO:0000160
Prci4g1072 680 FunFam Two-component response regulator 35 172 - -
Prci4g1072 680 MobiDBLite consensus disorder prediction 164 178 - -
Prci4g1072 680 MobiDBLite consensus disorder prediction 164 212 - -
Prci4g1072 680 Gene3D - 35 173 - -
Prci4g1072 680 PIRSF RR_ARR_type-B 13 670 IPR017053 GO:0003677|GO:0003700|GO:0009736
Prci4g1072 680 Gene3D - 212 274 - -
Prci4g1072 680 Pfam Response regulator receiver domain 37 145 IPR001789 GO:0000160
Prci4g1072 680 MobiDBLite consensus disorder prediction 1 25 - -
Prci4g1072 680 CDD REC_typeB_ARR-like 37 151 - -
Prci4g1072 680 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 366 IPR045279 GO:0009736
Prci4g1072 680 MobiDBLite consensus disorder prediction 191 212 - -
Prci4g1072 680 NCBIfam myb-like DNA-binding domain, SHAQKYF class 215 268 IPR006447 GO:0003677
Prci4g1072 680 ProSiteProfiles Response regulatory domain profile. 36 151 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1072 Prci-Chr4 8213369 8217540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1072 69 680 Response Regulator Gene Family AT3G16857 50.000 3.43e-179 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Prci4g1072 Response_reg 9.3e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1072 - K14491 gmx:100814930 1007.67