Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1012 ATGATTGCCGTAGATGAACCCACTTTTCGGATTCTTGGATACAGTGAAAACGCGCGGGATTTGCTGGGCATCACTCCTCAATCGGTTCCAAACCTTGAAAAATCTGAAGCTCTCACGATTGGAGCTGATGTTCGCACGCTTTTTACTCCCTCAAGTGCGGTGCTACTCGAAAAGGCCTTTGGGGCTCGGGAAATCACACTGTTAAACCCCATTTGGATTCATTCGAAGAATTCAGGGAAACCCTTTTATGCAATTTTGCACAGAATTGACGTGGGAATTGTGATTGATTTGGAACCCGCCAGAACAGAGGACCCTGCCCTTTCCATTGCTGGGGCAGTGCAGTCTCAGAAGTTGGCGGTGCGTGCAATCTCGCAGTTGCAGTCGCTTCCTGGTGGAGATATTCAGCTTTTGTGTGATACTGTAGTTGAGAGTGTTAGAGAACTGACTGGATATGAGCGGGTAATGGTTTATAAATTTCATGAGGATGAACATGGAGAGGTTGTTGCTGAGAGTAAGAGGCCAGACTTGGATCCTTATATCGGTTTGCACTACCCTGCTACTGATATTCCCCAGGCTTCAAGGTTCTTGTTCAAGCAGAATCGGGTTAGGATGATTGTGGATTGTCATGCCACTCCTGTTAAGGTAATTCAGGATGAAGCGCTTATGCAGCCGCTATGCTTAGTTGGATCAACCCTTCGTGCCCCCCATGGGTGTCATGCGCAGTATATGGCCAATATGGGATCGATAGCTTCACTGGCAATGGCAGTCATAATCAATGGGAACGAAGAGGAAGCTGTTGGTGGTCGTAACTCAATGAGGCTTTGGGGCCTGGTTGTTTGTCATCATACTTCTGCTAGATGCATTCCTTTCCCTCTGCGCTATGCTTGTGAGTTCCTTATGCAGGCCTTTGGGCTTCAGCTGAATATGGAACTTCAATTGGCATCACAGCTATTAGAAAAACGTGTTTTAAGGACACAGACCCTCTTGTGTGACATGTTACTTCGGGACTCTCTTACTGGCATTGTTACTCAGAGCCCTAATATTATGGACCTTGTGAAATGTGATGGAGCGGCTCTCTACTACCAAAATAACTACTACCCATTAGGTGTCACCCCAACTGAGTTCCAGATAAAGGATATCATAGAGTGGTTGTTGGCCAGCCACGGAGACTCAACAGGTCTAAGTACTGATAGTCTGGCTGATGCTGGGTATCCTGGGGCTGTTTCTCTTGGTGATGCGGTATGTGGGATGGCTGTTGCTTATATTACAGACAGGGCTTATCTTTTCTGGTTCAGATCCCATACAGCGAAAGAGATCAAATGGGGTGGTGCAAAGCATCACCCAGAGGACAAGGATGATGGACAGAGAATGAATCCACGTTCTTCATTCAAGGCATTTCTAGAAGTGGTAAAAAGCCGTAGTCTGCCCTGGGACAATGCAGAAATGGATGCTATACATTCCTTGCAGCTTATCTTGCGAGATTCATTTAGAGATGCTGAGCAAAACAATTCTAAGGCTGTTGTGCATTCCCAGCTTCATAATCTGGAATTGCAAGGGGTGGATGAGCTGAGTTCTGTGGCCAGGGAAATGGTTAGATTGATAGAGACTGCTACTGCTCCCATATTTGCTGTAAACGTTGATGGCTGCATAAATGGCTGGAATGCAAAGGCTGCAGAATTGACAGGACTCTCAGTTGATGAAGCTATGGGGAAGTCTTTGATACATGATATTGTGTATAAAGAATCTGAAGAAACCGTAGACAAGCTTCTTTCTCGTGCTTTAAGAGGTAGTCTTTCTAAAACTATTTCTCTATAAAACGTTGAAATAAAAATGAGGACGTTTGGCCCTGAACATGACAAGAAGGCAGTTTATATTGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATCATATCGTTGGAGTATGCTTTGTTGGTCAAGATGTTACTGGTCAAAAAGTAGTAATGGACAAATTCATTAACATACAAGGTGACTACAAGGCTATTGTACACAGTCCAAATCCATTGATCCCTCCTATTTTTGCATCGGATGATAACACATGCTGCTCAGAGTGGAACACTGCAATGGAAAATCTTACAGGATGGAAGCGTGAGGAAATCATTGGGAAAATGCTGGTAGGAGAGGTTTTTGGTAGTTTCTGTCGACTAAAGGGCCAAGATTCTCTGACCAAGTTCATGATTGTGCTGCACAATGCCCTTGGTGGACAGGATACGGATAAATTTCCCTTTTCATTTCTTGATAAGAATGGAAAATATGTGCAGGCACTCCTGACTGCTAATAAGAGGATAAACATGGATGGTCAGATCATTGGGGCATTCTGCTTCTTGCAAATTGCAAGTCCTGAACTTCAACAGGCTCTGAAAATCCAGAGACAACAGGAGAAGAAATGCTTTGCTAGGATGAAAGAATTAGCTTACATTTGTCAAGAAATAAAGAATCCTTTGAATGGCATACGCTTTACAAACTCTCTTCTGGAAGCTACAGACTTGACTGATGATCAAAAGCAGTTTCTTGAGACCAGTACTGCTTGTGAGAAGCAGATGTTGAAGATAATACGTGATGTAGATTTGGAGAGCATTGATGATGGGTCCTTGGAGCTTGAGAAGGGGGAATTTTTACTTGGAAGTGTCATCAATGCAGTTGTTAGCCAAGTGATGATATTGCTGAGAGAAAGAAATTTACAGTTGATCCGTGATATTCCTGAAGAAATCAAGACCTTTGCTGTATATGGTGATCAATCAAGGATTCAACAGGTCTTGGCTGATTTCTTATTGAATATGGTGCGCTATGCACCATCTCCAGATGGTTGGGTAGAGATTCATGTTTTTCCGAGAATAAGACAAATTTCTGACGGACTTACTCTTCTTCATACTGAATTCAGGATGGTATGTCCCGGTGAAGGTCTTCCTGCTGAATTGATTCAAGACATGTTCAATAGCAACCTGTGGGTAACTCAAGAAGGCTTAGGGCTGAGCATGTGCAGGAGGATTCTAAAGCTAATGAGCGGTGAAGTCCAATATATTAGGGAGTCAGAACGATGCTACTTCTTAGTAATTATTGAGCTGCCCATGACACGGAAAGATTCTAAAAATGTGAACTAG 3123 0.4348 MIAVDEPTFRILGYSENARDLLGITPQSVPNLEKSEALTIGADVRTLFTPSSAVLLEKAFGAREITLLNPIWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIQLLCDTVVESVRELTGYERVMVYKFHEDEHGEVVAESKRPDLDPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVKVIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNEEEAVGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLEKRVLRTQTLLCDMLLRDSLTGIVTQSPNIMDLVKCDGAALYYQNNYYPLGVTPTEFQIKDIIEWLLASHGDSTGLSTDSLADAGYPGAVSLGDAVCGMAVAYITDRAYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMNPRSSFKAFLEVVKSRSLPWDNAEMDAIHSLQLILRDSFRDAEQNNSKAVVHSQLHNLELQGVDELSSVAREMVRLIETATAPIFAVNVDGCINGWNAKAAELTGLSVDEAMGKSLIHDIVYKESEETVDKLLSRALRGSLSKTISLXNVEIKMRTFGPEHDKKAVYIVVNACSSKDYTNHIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCSEWNTAMENLTGWKREEIIGKMLVGEVFGSFCRLKGQDSLTKFMIVLHNALGGQDTDKFPFSFLDKNGKYVQALLTANKRINMDGQIIGAFCFLQIASPELQQALKIQRQQEKKCFARMKELAYICQEIKNPLNGIRFTNSLLEATDLTDDQKQFLETSTACEKQMLKIIRDVDLESIDDGSLELEKGEFLLGSVINAVVSQVMILLRERNLQLIRDIPEEIKTFAVYGDQSRIQQVLADFLLNMVRYAPSPDGWVEIHVFPRIRQISDGLTLLHTEFRMVCPGEGLPAELIQDMFNSNLWVTQEGLGLSMCRRILKLMSGEVQYIRESERCYFLVIIELPMTRKDSKNVN 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1012 1040 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 797 862 IPR036097 GO:0000155|GO:0007165
Prci4g1012 1040 SUPERFAMILY PYP-like sensor domain (PAS domain) 679 782 IPR035965 -
Prci4g1012 1040 CDD HisKA 806 862 IPR003661 GO:0000155|GO:0007165
Prci4g1012 1040 Gene3D PAS domain 1 236 - -
Prci4g1012 1040 FunFam Phytochrome 678 786 - -
Prci4g1012 1040 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 918 1022 IPR003594 -
Prci4g1012 1040 SUPERFAMILY GAF domain-like 113 308 - -
Prci4g1012 1040 ProSiteProfiles PAS repeat profile. 526 597 IPR000014 -
Prci4g1012 1040 NCBIfam PAS domain S-box protein 533 599 IPR000014 -
Prci4g1012 1040 Gene3D - 869 1038 IPR036890 -
Prci4g1012 1040 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 881 1030 IPR036890 -
Prci4g1012 1040 Pfam PAS fold 529 649 IPR013767 GO:0006355
Prci4g1012 1040 Pfam PAS fold 665 784 IPR013767 GO:0006355
Prci4g1012 1040 FunFam Phytochrome 316 446 - -
Prci4g1012 1040 SUPERFAMILY GAF domain-like 319 496 - -
Prci4g1012 1040 FunFam Phytochrome 869 1035 - -
Prci4g1012 1040 SMART HisKA_10 806 870 IPR003661 GO:0000155|GO:0007165
Prci4g1012 1040 FunFam Phytochrome 787 868 - -
Prci4g1012 1040 PANTHER TWO-COMPONENT HISTIDINE KINASE 765 1014 - -
Prci4g1012 1040 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 133 301 IPR016132 -
Prci4g1012 1040 SUPERFAMILY PYP-like sensor domain (PAS domain) 531 645 IPR035965 -
Prci4g1012 1040 SMART gaf_1 133 321 IPR003018 GO:0005515
Prci4g1012 1040 CDD PAS 676 784 IPR000014 -
Prci4g1012 1040 Gene3D - 114 472 IPR029016 -
Prci4g1012 1040 Pfam His Kinase A (phospho-acceptor) domain 810 870 IPR003661 GO:0000155|GO:0007165
Prci4g1012 1040 SUPERFAMILY PYP-like sensor domain (PAS domain) 1 103 IPR035965 -
Prci4g1012 1040 Gene3D PAS domain 524 653 - -
Prci4g1012 1040 PRINTS Phytochrome signature 148 167 IPR001294 GO:0006355|GO:0009584
Prci4g1012 1040 PRINTS Phytochrome signature 529 545 IPR001294 GO:0006355|GO:0009584
Prci4g1012 1040 PRINTS Phytochrome signature 627 644 IPR001294 GO:0006355|GO:0009584
Prci4g1012 1040 PRINTS Phytochrome signature 459 477 IPR001294 GO:0006355|GO:0009584
Prci4g1012 1040 PRINTS Phytochrome signature 48 70 IPR001294 GO:0006355|GO:0009584
Prci4g1012 1040 PRINTS Phytochrome signature 426 445 IPR001294 GO:0006355|GO:0009584
Prci4g1012 1040 PRINTS Phytochrome signature 548 563 IPR001294 GO:0006355|GO:0009584
Prci4g1012 1040 PRINTS Phytochrome signature 233 254 IPR001294 GO:0006355|GO:0009584
Prci4g1012 1040 PRINTS Phytochrome signature 647 667 IPR001294 GO:0006355|GO:0009584
Prci4g1012 1040 PRINTS Phytochrome signature 341 361 IPR001294 GO:0006355|GO:0009584
Prci4g1012 1040 ProSitePatterns Phytochrome chromophore attachment site signature. 233 242 IPR013516 -
Prci4g1012 1040 Pfam Phytochrome region 324 498 IPR013515 GO:0006355|GO:0009584
Prci4g1012 1040 Gene3D - 787 868 - -
Prci4g1012 1040 Gene3D - 316 489 IPR043150 -
Prci4g1012 1040 CDD HATPase_Phy-like 917 1029 IPR044767 -
Prci4g1012 1040 Pfam PAS fold 1 100 IPR013654 GO:0006355
Prci4g1012 1040 FunFam Phytochrome 522 659 - -
Prci4g1012 1040 CDD PAS 537 649 IPR000014 -
Prci4g1012 1040 SMART pas_2 528 595 IPR000014 -
Prci4g1012 1040 SMART pas_2 664 734 IPR000014 -
Prci4g1012 1040 SMART HKATPase_4 918 1033 IPR003594 -
Prci4g1012 1040 Pfam GAF domain 133 311 IPR003018 GO:0005515
Prci4g1012 1040 Gene3D PAS domain 678 786 - -
Prci4g1012 1040 ProSiteProfiles Histidine kinase domain profile. 813 1033 IPR005467 -
Prci4g1012 1040 ProSiteProfiles PAS repeat profile. 665 717 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1012 Prci-Chr4 7721705 7727911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1012 1 1031 Histidine Kinase Gene Family AT4G16250 74.808 0.0 1644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1012 K12121 - tcc:18603656 1847.02