Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0992 ATGCACAGAGGAGACCGCCTTGGAAGCTCTCACTATCGTCACTCCCGGGGTCCCTCATGGTTGTCCGATGATCCCTTGACCTATGGAAACCCCAGCCGTGGCCCATCTAACCTCCGCTCTGCCGGAGCCGAAGGTCACTATCGTTCTCTGGACAGTCCGCCAAGTCGGTCTCCTGGCAGAGGCGGTAGGTTCCGGCCACTGGATGGTCCTAGTGGTTTCGGGTTTGATAGTCATCCTGTGCCACCGCATTCTGGGCAGAAACGAGGCTTTCCTTTTTCTGGGCGTGGAGGGTCGCCAGATCGTTTTGATGGTAGAAGTTTTGCAAAACTTTATGTTGGATCTGTACCCCGGACTGCTACTGAAGAAGATATTCGCCCTTTGTTTGAGGAACATGGAAATGTGCTTGAGGTTGCTTTGATTAAAGATAGAAAAGCTGGGCAACAACAAGGTTATTGCTTCATTAAGTATGCTACTTCAGAAGAAGCTGATCAGGCAATTAGAGCCTTGCACAAACAACATACTCTTCCTGGAGGTGTATGTCCAATCCAAGTGAGATATGCTGATGCTGAACAGGAACGTCTTGGTGCAACTGAGTACAAATTATTTGTGGGCTCTTTGAACAAACAGGCTACAGTAGAGGAAGTTGAGGAAATTTTCTCAAAATATGGCCAGGTGGAAGATGTGTGTCTCCTGCGTGATGAGAAGAAGCAAAGCCGTGGACGCTGTTTTGTTAAATACTCTCATAGGGATATGGCACTGGCAGCTATAAATGCTCTTAACGGAATTTATACAATGAAAGGTTGTGATCAACCATTAACTGTCCGGTTTGCCGATCCAAAGAGACCTCGGCAAGGAGACTCAAGGGGTCCTGCTTTTCCCCGTCCAGGACTTGGTCCTAGATTTGAAGCACCAGACCCAGGTCCTCCATCATATGTTAATGAACCTAAGGTTGATCGTATCCCTCCGTTTGATGCTTGGCGTCCAATGCATCCACTGAATATGGGATCGTCCTCTAACATTGGTCCTTATGGTGTAAGGCCTCCTCTGCTCCCAAGATCTAGTGGCCCTGCAATGCCTATGAATCCAGGTGTTCCTGCTAGTGGCTTTGGAGCCCCCATGGATGGTCCTTTTCAAGGGAACTCTTTGTCATCAATGTCACAACAGAATTTGAACCCAGAAATTTCACAACTTCCTCCTGTTAGCCAACAAATGTTATCTTCACAGATACCTGTGCATTTGTCTCAGGAACTGCCTTGTTCCCTCCATTTGTACCATCAAGCTCCAATGCCCAGCTTACAGACATCAATGTCTCTTTCATCAGTTAGGCAGGTTGGTCAGCCGCAACCTTTTTTGTCTAGGGGGCCGCTTCCTATTCTGCAGGTGCCTGGCATGAATGGACAGTTACCAGCGTCCCAGCATCAAACTCAACAGAATCTTTCATCTGCTGCAATGCCTCGGAGCCCTCTCGATGTTAGATTGCAATCTAATACAGCTGTAAATACTGCAAACCAACAGCGACTTCCTGCCTTGTTGCAGCAGCAGCAGCAGCCGCCACTTAAGCCTACCTTGTTGCAGCAGCAGCAACCACTTCAGCCAACCTTGTTGCAGCAGCAGCAACCGCTTCAGCCAACCTTGTTGCAGCAGCAGCCACTTCAGCCTCTTCAGCAGTCCCCATCTCAGTTGGCTCAGATGTGGTCACAACAAACTCAGACTTTGCAAGCAAGCTTTCATTCGTCTCATCATGCCTTTTCCCAGATTCAACAAGTGCAAATGATGCAGCCATCTTGTCAAGAATTAGCATTGCAGCAAAATGCAGAAGCTGCTAAAAAGCAGTCTCAATCGCCTATGATTGTACCACAGTCAGTGGCCAGTAATCCCGCTGCTGCTGCAGCAGCAGCCACAGATCTTCCTTCTTCCGCATATGCTTCTGCTACACCTACAATAAACCAGAACGTGGCTCTTTCAAAATGCAATTGGACAGAGCATATATCTCCTGAGGGCTTCAAGTATTATTATAATAGTGTCACTCATGAAAGTCGGTGGGAGAAACCAGAGGAGTTGACATTATCTGAAAGGCAAAAACAACAGCAAATGCCAACTTTTCACCAGTCTCAATCTCAGTTACAACCACCAGCGTTATCTGCCCTGCCAGTTCCCCAATCGCAACAGGTGCTGCCGCAAGGTCAGGTGCAGATTCTCGACCAGGTCCAGCAACAGATGCAGCAGCCTTCTGTATCTTCTGAAGTTGGATATATCCAATCACAGACATCAAGTGTATCTGTTGGTGATCCTCCTGCGCACGTCCCACATGGGTTTCATGGTTCACAAGGGTGGACGTTGAATAAGCCAGCAGGAAATTATTGA 2364 0.4805 MHRGDRLGSSHYRHSRGPSWLSDDPLTYGNPSRGPSNLRSAGAEGHYRSLDSPPSRSPGRGGRFRPLDGPSGFGFDSHPVPPHSGQKRGFPFSGRGGSPDRFDGRSFAKLYVGSVPRTATEEDIRPLFEEHGNVLEVALIKDRKAGQQQGYCFIKYATSEEADQAIRALHKQHTLPGGVCPIQVRYADAEQERLGATEYKLFVGSLNKQATVEEVEEIFSKYGQVEDVCLLRDEKKQSRGRCFVKYSHRDMALAAINALNGIYTMKGCDQPLTVRFADPKRPRQGDSRGPAFPRPGLGPRFEAPDPGPPSYVNEPKVDRIPPFDAWRPMHPLNMGSSSNIGPYGVRPPLLPRSSGPAMPMNPGVPASGFGAPMDGPFQGNSLSSMSQQNLNPEISQLPPVSQQMLSSQIPVHLSQELPCSLHLYHQAPMPSLQTSMSLSSVRQVGQPQPFLSRGPLPILQVPGMNGQLPASQHQTQQNLSSAAMPRSPLDVRLQSNTAVNTANQQRLPALLQQQQQPPLKPTLLQQQQPLQPTLLQQQQPLQPTLLQQQPLQPLQQSPSQLAQMWSQQTQTLQASFHSSHHAFSQIQQVQMMQPSCQELALQQNAEAAKKQSQSPMIVPQSVASNPAAAAAAATDLPSSAYASATPTINQNVALSKCNWTEHISPEGFKYYYNSVTHESRWEKPEELTLSERQKQQQMPTFHQSQSQLQPPALSALPVPQSQQVLPQGQVQILDQVQQQMQQPSVSSEVGYIQSQTSSVSVGDPPAHVPHGFHGSQGWTLNKPAGNY 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0992 787 ProSitePatterns WW/rsp5/WWP domain signature. 659 684 IPR001202 GO:0005515
Prci4g0992 787 Gene3D - 102 193 IPR012677 -
Prci4g0992 787 PANTHER RNA BINDING PROTEIN 52 609 - -
Prci4g0992 787 MobiDBLite consensus disorder prediction 465 485 - -
Prci4g0992 787 CDD WW 656 686 IPR001202 GO:0005515
Prci4g0992 787 SMART rrm1_1 200 275 IPR000504 GO:0003723
Prci4g0992 787 SMART rrm1_1 109 185 IPR000504 GO:0003723
Prci4g0992 787 Pfam WW domain 657 684 IPR001202 GO:0005515
Prci4g0992 787 MobiDBLite consensus disorder prediction 276 311 - -
Prci4g0992 787 FunFam flowering time control protein FCA isoform X2 102 194 - -
Prci4g0992 787 Gene3D - 194 287 IPR012677 -
Prci4g0992 787 MobiDBLite consensus disorder prediction 1 98 - -
Prci4g0992 787 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 279 IPR000504 GO:0003723
Prci4g0992 787 ProSiteProfiles WW/rsp5/WWP domain profile. 659 686 IPR001202 GO:0005515
Prci4g0992 787 SMART ww_5 654 686 IPR001202 GO:0005515
Prci4g0992 787 MobiDBLite consensus disorder prediction 297 311 - -
Prci4g0992 787 SUPERFAMILY WW domain 658 688 IPR036020 GO:0005515
Prci4g0992 787 SUPERFAMILY RNA-binding domain, RBD 67 187 IPR035979 GO:0003676
Prci4g0992 787 Gene3D - 653 699 - -
Prci4g0992 787 MobiDBLite consensus disorder prediction 443 485 - -
Prci4g0992 787 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 173 IPR000504 GO:0003723
Prci4g0992 787 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 267 IPR000504 GO:0003723
Prci4g0992 787 PRINTS Paraneoplastic encephalomyelitis antigen family signature 219 231 IPR002343 GO:0003723|GO:1990904
Prci4g0992 787 PRINTS Paraneoplastic encephalomyelitis antigen family signature 260 277 IPR002343 GO:0003723|GO:1990904
Prci4g0992 787 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Prci4g0992 787 PRINTS Paraneoplastic encephalomyelitis antigen family signature 204 219 IPR002343 GO:0003723|GO:1990904
Prci4g0992 787 MobiDBLite consensus disorder prediction 753 787 - -
Prci4g0992 787 SUPERFAMILY RNA-binding domain, RBD 192 297 IPR035979 GO:0003676
Prci4g0992 787 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 189 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0992 Prci-Chr4 7495390 7506555 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0992 106 284 Eukaryotic Initiation Factors Gene Family AT1G71770 27.692 5.46e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0992 - - pcin:129309480 1377.46