Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0991 ATGCACAGAGGAGACCGCCTTGGAAGCTCTCACTATCGTCACTCCCGGGGTCCCTCATGGTTGTCCGATGATCCCTTGACCTATGGAAACCCCAGCCGTGGCCCATCTAACCTCCGCTCTGCCGGAGCCGAAGGTCACTATCGTTCTCTGGACAGTCCGCCAAGTCGGTCTCCTGGCAGAGGCGGTAGGTTCCGGCCACTGGATGGTCCTAGTGGTTTCGGGTTTGATAGTCATCCTGTGCCACCGCATTCTGGGCAGAAACGAGGCTTTCCTTTTTCTGGGCGTGGAGGGTCGCCAGATCGTTTTGATGGTAGAAGTTTTGCAAAACTTTATGTTGGATCTGTACCCCGGACTGCTACTGAAGAAGATATTCGCCCTTTGTTTGAGGAACATGGAAATGTGCTTGAGGTTGCTTTGATTAAAGATAGAAAAGCTGGGCAACAACAAGGTTATTGCTTCATTAAGTATGCTACTTCAGAAGAAGCTGATCAGGCAATTAGAGCCTTGCACAAACAACATACTCTTCCTGGAGGTGTATGTCCAATCCAAGTGAGATATGCTGATGCTGAACAGGAACGTCTTGGTGCAACTGAGTACAAATTATTTGTGGGCTCTTTGAACAAACAGGCTACAGTAGAGGAAGTTGAGGAAATTTTCTCAAAATATGGCCAGGTGGAAGATGTGTGTCTCCTGCGTGATGAGAAGAAGCAAAGCCGTGGACGCTGTTTTGTTAAATACTCTCATAGGGATATGGCACTGGCAGCTATAAATGCTCTTAACGGAATTTATACAATGAAAGGTTGTGATCAACCATTAACTGTCCGGTTTGCCGATCCAAAGAGACCTCGGCAAGGAGACTCAAGGGGTCCTGCTTTTCCCCGTCCAGGACTTGGTCCTAGATTTGAAGCACCAGACCCAGGTCCTCCATCATATGTTAATGAACCTAAGGTTGATCGTATCCCTCCGTTTGATGCTTGGCGTCCAATGCATCCACTGAATATGGGATCGTCCTCTAACATTGGTCCTTATGGTGTAAGGCCTCCTCTGCTCCCAAGATCTAGTGGCCCTGCAATGCCTATGAATCCAGGTGTTCCTGCTAGTGGCTTTGGAGCCCCCATGGATGGTCCTTTTCAAGGGAACTCTTTGTCATCAATGTCACAACAGGAACTGCCTTGTTCCCTCCATTTGTACCATCAAGCTCCAATGCCCAGCTTACAGACATCAATGTCTCTTTCATCAGTTAGGCAGGTTGGTCAGCCGCAACCTTTTTTGTCTAGGGGGCCGCTTCCTATTCTGCAGGTGCCTGGCATGAATGGACAGTTACCAGCGTCCCAGCATCAAACTCAACAGAATCTTTCATCTGCTGCAATGCCTCGGAGCCCTCTCGATGTTAGATTGCAATCTAATACAGCTGTAAATACTGCAAACCAACAGCGACTTCCTGCCTTGTTGCAGCAGCAGCAGCAGCCGCCACTTAAGCCTACCTTGTTGCAGCAGCAGCAACCACTTCAGCCAACCTTGTTGCAGCAGCAGCAACCGCTTCAGCCAACCTTGTTGCAGCAGCAGCCACTTCAGCCTCTTCAGCAGTCCCCATCTCAGTTGGCTCAGATGTGGTCACAACAAACTCAGACTTTGCAAGCAAGCTTTCATTCGTCTCATCATGCCTTTTCCCAGATTCAACAAGTGCAAATGATGCAGCCATCTTGTCAAGAATTAGCATTGCAGCAAAATGCAGAAGCTGCTAAAAAGCAGTCTCAATCGCCTATGATTGTACCACAGTCAGTGGCCAGTAATCCCGCTGCTGCTGCAGCAGCAGCCACAGATCTTCCTTCTTCCGCATATGCTTCTGCTACACCTACAATAAACCAGAACGTGGCTCTTTCAAAATGCAATTGGACAGAGCATATATCTCCTGAGGGCTTCAAGTATTATTATAATAGTGTCACTCATGAAAGTCGGTGGGAGAAACCAGAGGAGTTGACATTATCTGAAAGGCAAAAACAACAGCAAATGCCAACTTTTCACCAGTCTCAATCTCAGTTACAACCACCAGCGTTATCTGCCCTGCCAGTTCCCCAATCGCAACAGGTGCTGCCGCAAGGTCAGGTGCAGATTCTCGACCAGGTCCAGCAACAGATGCAGCAGCCTTCTGTATCTTCTGAAGTTGGATATATCCAATCACAGACATCAAGTGTATCTGTTGGTGATCCTCCTGCGCACGTCCCACATGGGTTTCATGGTTCACAAGGGTGGACGTTGAATAAGCCAGCAGGAAATTATTGA 2283 0.484 MHRGDRLGSSHYRHSRGPSWLSDDPLTYGNPSRGPSNLRSAGAEGHYRSLDSPPSRSPGRGGRFRPLDGPSGFGFDSHPVPPHSGQKRGFPFSGRGGSPDRFDGRSFAKLYVGSVPRTATEEDIRPLFEEHGNVLEVALIKDRKAGQQQGYCFIKYATSEEADQAIRALHKQHTLPGGVCPIQVRYADAEQERLGATEYKLFVGSLNKQATVEEVEEIFSKYGQVEDVCLLRDEKKQSRGRCFVKYSHRDMALAAINALNGIYTMKGCDQPLTVRFADPKRPRQGDSRGPAFPRPGLGPRFEAPDPGPPSYVNEPKVDRIPPFDAWRPMHPLNMGSSSNIGPYGVRPPLLPRSSGPAMPMNPGVPASGFGAPMDGPFQGNSLSSMSQQELPCSLHLYHQAPMPSLQTSMSLSSVRQVGQPQPFLSRGPLPILQVPGMNGQLPASQHQTQQNLSSAAMPRSPLDVRLQSNTAVNTANQQRLPALLQQQQQPPLKPTLLQQQQPLQPTLLQQQQPLQPTLLQQQPLQPLQQSPSQLAQMWSQQTQTLQASFHSSHHAFSQIQQVQMMQPSCQELALQQNAEAAKKQSQSPMIVPQSVASNPAAAAAAATDLPSSAYASATPTINQNVALSKCNWTEHISPEGFKYYYNSVTHESRWEKPEELTLSERQKQQQMPTFHQSQSQLQPPALSALPVPQSQQVLPQGQVQILDQVQQQMQQPSVSSEVGYIQSQTSSVSVGDPPAHVPHGFHGSQGWTLNKPAGNY 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0991 760 Gene3D - 102 193 IPR012677 -
Prci4g0991 760 PRINTS Paraneoplastic encephalomyelitis antigen family signature 204 219 IPR002343 GO:0003723|GO:1990904
Prci4g0991 760 PRINTS Paraneoplastic encephalomyelitis antigen family signature 260 277 IPR002343 GO:0003723|GO:1990904
Prci4g0991 760 PRINTS Paraneoplastic encephalomyelitis antigen family signature 219 231 IPR002343 GO:0003723|GO:1990904
Prci4g0991 760 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Prci4g0991 760 SUPERFAMILY RNA-binding domain, RBD 192 297 IPR035979 GO:0003676
Prci4g0991 760 Gene3D - 194 287 IPR012677 -
Prci4g0991 760 SMART rrm1_1 200 275 IPR000504 GO:0003723
Prci4g0991 760 SMART rrm1_1 109 185 IPR000504 GO:0003723
Prci4g0991 760 MobiDBLite consensus disorder prediction 726 760 - -
Prci4g0991 760 Pfam WW domain 630 657 IPR001202 GO:0005515
Prci4g0991 760 MobiDBLite consensus disorder prediction 1 98 - -
Prci4g0991 760 SUPERFAMILY WW domain 631 661 IPR036020 GO:0005515
Prci4g0991 760 ProSiteProfiles WW/rsp5/WWP domain profile. 632 659 IPR001202 GO:0005515
Prci4g0991 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 279 IPR000504 GO:0003723
Prci4g0991 760 MobiDBLite consensus disorder prediction 438 458 - -
Prci4g0991 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 267 IPR000504 GO:0003723
Prci4g0991 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 173 IPR000504 GO:0003723
Prci4g0991 760 CDD WW 629 659 IPR001202 GO:0005515
Prci4g0991 760 PANTHER RNA BINDING PROTEIN 51 585 - -
Prci4g0991 760 FunFam flowering time control protein FCA isoform X2 102 194 - -
Prci4g0991 760 MobiDBLite consensus disorder prediction 656 676 - -
Prci4g0991 760 SMART ww_5 627 659 IPR001202 GO:0005515
Prci4g0991 760 Gene3D - 626 672 - -
Prci4g0991 760 MobiDBLite consensus disorder prediction 416 458 - -
Prci4g0991 760 MobiDBLite consensus disorder prediction 276 310 - -
Prci4g0991 760 SUPERFAMILY RNA-binding domain, RBD 67 187 IPR035979 GO:0003676
Prci4g0991 760 ProSitePatterns WW/rsp5/WWP domain signature. 632 657 IPR001202 GO:0005515
Prci4g0991 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 189 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0991 Prci-Chr4 7495389 7506555 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0991 106 285 Eukaryotic Initiation Factors Gene Family AT1G71770 27.551 5.20e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0991 - - pcin:129309480 1320.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g0991 4 7495389 7506555 Prci4g0991 4 7495389 7506555 ECH