Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0990 ATGGAAACCCCAGCCGTGGCCCATCTAACCTCCGCTCTGCCGGAGCCGAAGGTCACTATCGTTCTCTGGACAGTCCGCCAAGTCGGTCTCCTGGCAGAGGCGGTAGGTTCCGGCCACTGGATGGTCCTAGTGGTTTCGGGTTTGATAGTCATCCTGTGCCACCGCATTCTGGGCAGAAACGAGGCTTTCCTTTTTCTGGGCGTGGAGGGTCGCCAGATTCGCCCTTTGTTTGAGGAACATGGAAATGTGCTTGAGGTTGCTTTGATTAAAGATAGAAAAGCTGGGCAACAACAAGGTTATTGCTTCATTAAGTATGCTACTTCAGAAGAAGCTGATCAGGCAATTAGAGCCTTGCACAAACAACATACTCTTCCTGGAGGTGTATGTCCAATCCAAGTGAGATATGCTGATGCTGAACAGGAACGTCTTGGTGCAACTGAGTACAAATTATTTGTGGGCTCTTTGAACAAACAGGCTACAGTAGAGGAAGTTGAGGAAATTTTCTCAAAATATGGCCAGGTGGAAGATGTGTGTCTCCTGCGTGATGAGAAGAAGCAAAGCCGTGGACGCTGTTTTGTTAAATACTCTCATAGGGATATGGCACTGGCAGCTATAAATGCTCTTAACGGAATTTATACAATGAAAGGTTGTGATCAACCATTAACTGTCCGGTTTGCCGATCCAAAGAGACCTCGGCAAGGAGACTCAAGGGGTCCTGCTTTTCCCCGTCCAGGACTTGGTCCTAGATTTGAAGCACCAGACCCAGGTCCTCCATCATATGTTAATGAACCTAAGGTTGATCGTATCCCTCCGTTTGATGCTTGGCGTCCAATGCATCCACTGAATATGGGATCGTCCTCTAACATTGGTCCTTATGGTGTAAGGCCTCCTCTGCTCCCAAGATCTAGTGGCCCTGCAATGCCTATGAATCCAGGTGTTCCTGCTAGTGGCTTTGGAGCCCCCATGGATGGTCCTTTTCAAGGGAACTCTTTGTCATCAATGTCACAACAGAATTTGAACCCAGAAATTTCACAACTTCCTCCTGTTAGCCAACAAATGTTATCTTCACAGATACCTGTGCATTTGTCTCAGGAACTGCCTTGTTCCCTCCATTTGTACCATCAAGCTCCAATGCCCAGCTTACAGACATCAATGTCTCTTTCATCAGTTAGGCAGGTTGGTCAGCCGCAACCTTTTTTGTCTAGGGGGCCGCTTCCTATTCTGCAGGTGCCTGGCATGAATGGACAGTTACCAGCGTCCCAGCATCAAACTCAACAGAATCTTTCATCTGCTGCAATGCCTCGGAGCCCTCTCGATGTTAGATTGCAATCTAATACAGCTGTAAATACTGCAAACCAACAGCGACTTCCTGCCTTGTTGCAGCAGCAGCAGCAGCCGCCACTTAAGCCTACCTTGTTGCAGCAGCAGCAACCACTTCAGCCAACCTTGTTGCAGCAGCAGCAACCGCTTCAGCCAACCTTGTTGCAGCAGCAGCCACTTCAGCCTCTTCAGCAGTCCCCATCTCAGTTGGCTCAGATGTGGTCACAACAAACTCAGACTTTGCAAGCAAGCTTTCATTCGTCTCATCATGCCTTTTCCCAGATTCAACAAGTGCAAATGATGCAGCCATCTTGTCAAGAATTAGCATTGCAGCAAAATGCAGAAGCTGCTAAAAAGCAGTCTCAATCGCCTATGATTGTACCACAGTCAGTGGCCAGTAATCCCGCTGCTGCTGCAGCAGCAGCCACAGATCTTCCTTCTTCCGCATATGCTTCTGCTACACCTACAATAAACCAGAACGTGGCTCTTTCAAAATGCAATTGGACAGAGCATATATCTCCTGAGGGCTTCAAGTATTATTATAATAGTGTCACTCATGAAAGTCGGTGGGAGAAACCAGAGGAGTTGACATTATCTGAAAGGCAAAAACAACAGCAAATGCCAACTTTTCACCAGTCTCAATCTCAGTTACAACCACCAGCGTTATCTGCCCTGCCAGTTCCCCAATCGCAACAGGTGCTGCCGCAAGGTCAGGTGCAGATTCTCGACCAGGTCCAGCAACAGATGCAGCAGCCTTCTGTATCTTCTGAAGTTGGATATATCCAATCACAGACATCAAGTGTATCTGTTGGTGATCCTCCTGCGCACGTCCCACATGGGTTTCATGGTTCACAAGGGTGGACGTTGAATAAGCCAGCAGGAAATTATTGA 2211 0.4799 METPAVAHLTSALPEPKVTIVLWTVRQVGLLAEAVGSGHWMVLVVSGLIVILCHRILGRNEAFLFLGVEGRQIRPLFEEHGNVLEVALIKDRKAGQQQGYCFIKYATSEEADQAIRALHKQHTLPGGVCPIQVRYADAEQERLGATEYKLFVGSLNKQATVEEVEEIFSKYGQVEDVCLLRDEKKQSRGRCFVKYSHRDMALAAINALNGIYTMKGCDQPLTVRFADPKRPRQGDSRGPAFPRPGLGPRFEAPDPGPPSYVNEPKVDRIPPFDAWRPMHPLNMGSSSNIGPYGVRPPLLPRSSGPAMPMNPGVPASGFGAPMDGPFQGNSLSSMSQQNLNPEISQLPPVSQQMLSSQIPVHLSQELPCSLHLYHQAPMPSLQTSMSLSSVRQVGQPQPFLSRGPLPILQVPGMNGQLPASQHQTQQNLSSAAMPRSPLDVRLQSNTAVNTANQQRLPALLQQQQQPPLKPTLLQQQQPLQPTLLQQQQPLQPTLLQQQPLQPLQQSPSQLAQMWSQQTQTLQASFHSSHHAFSQIQQVQMMQPSCQELALQQNAEAAKKQSQSPMIVPQSVASNPAAAAAAATDLPSSAYASATPTINQNVALSKCNWTEHISPEGFKYYYNSVTHESRWEKPEELTLSERQKQQQMPTFHQSQSQLQPPALSALPVPQSQQVLPQGQVQILDQVQQQMQQPSVSSEVGYIQSQTSSVSVGDPPAHVPHGFHGSQGWTLNKPAGNY 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0990 736 Coils Coil 736 736 - -
Prci4g0990 736 ProSitePatterns WW/rsp5/WWP domain signature. 608 633 IPR001202 GO:0005515
Prci4g0990 736 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 138 IPR000504 GO:0003723
Prci4g0990 736 MobiDBLite consensus disorder prediction 702 736 - -
Prci4g0990 736 MobiDBLite consensus disorder prediction 246 260 - -
Prci4g0990 736 SUPERFAMILY RNA-binding domain, RBD 142 246 IPR035979 GO:0003676
Prci4g0990 736 SUPERFAMILY RNA-binding domain, RBD 71 141 IPR035979 GO:0003676
Prci4g0990 736 MobiDBLite consensus disorder prediction 414 434 - -
Prci4g0990 736 CDD WW 605 635 IPR001202 GO:0005515
Prci4g0990 736 SMART ww_5 603 635 IPR001202 GO:0005515
Prci4g0990 736 PANTHER RNA BINDING PROTEIN 71 558 - -
Prci4g0990 736 SUPERFAMILY WW domain 607 637 IPR036020 GO:0005515
Prci4g0990 736 Gene3D - 602 648 - -
Prci4g0990 736 Gene3D - 143 236 IPR012677 -
Prci4g0990 736 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 150 216 IPR000504 GO:0003723
Prci4g0990 736 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 122 IPR000504 GO:0003723
Prci4g0990 736 Gene3D - 66 142 IPR012677 -
Prci4g0990 736 MobiDBLite consensus disorder prediction 224 260 - -
Prci4g0990 736 MobiDBLite consensus disorder prediction 392 434 - -
Prci4g0990 736 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 148 228 IPR000504 GO:0003723
Prci4g0990 736 Pfam WW domain 606 633 IPR001202 GO:0005515
Prci4g0990 736 SMART rrm1_1 149 224 IPR000504 GO:0003723
Prci4g0990 736 SMART rrm1_1 42 134 IPR000504 GO:0003723
Prci4g0990 736 ProSiteProfiles WW/rsp5/WWP domain profile. 608 635 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0990 Prci-Chr4 7495388 7506555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0990 72 258 Eukaryotic Initiation Factors Gene Family AT4G34110 25.962 8.29e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0990 - - pcin:129309480 1127.85