Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0980 ATGGATATGGACATGGATACTTCGGAAGCTGGCGGCATTAAAGGAGGAAGCAGCTGCAACATCCAAAACGACGACGAATTGGACCTCCGGAGAGGCCCTTGGACCGTCGACGAAGACCTCACCCTCATCAATTACATTGCCACTCATGGCGAAGGTCGCTGGAACTCCCTCGCTCGCTCTGCTGGCCTCAAACGAACTGGTAAGAGCTGCAGATTGAGATGGCTCAACTATCTCCGACCCGATGTTCGACGTGGAAACATAACCCTCGAAGAACAGCTCCTGATTCTCGAGCTTCATTCTCGCTGGGGAAACAGATGGTCGAAAATCGCCCAGTACTTGCCGGGAAGGACTGACAACGAGATCAAGAACTACTGGAGGACAAGAGTCCAGAAGCACGCGAAGCAGCTCAAATGTGACGTGAACAGCAAGCAATTCAAAGACACCATGCGTTTCCTCTGGATGCCCAGGCTGGTCGAGCGTATTCAAGCTTCCGCCGCCGCCTCCTCCGTTTCTCCGCCGATATCCACCATCACCGCCGCCAATACTCCCAGCGCCGCATACAATCACAACAACTTCGAGTTTGGGGGCGCCACTCAGATCACCGGAAGTAACTTCACTACAGAGAATAGCAGCACGGCGGCTTCGTCAGAGTCGTTCGGGTCAACTCAGCTGTCGCCGATCTCGGACCTGACAGATTATTATTACGGCGGAGTTCCGGTAGGTAATAAGGGTAACCCTAACCCGGATTACTGTCAAACGGTTGATTTGAGCTACTCGGATAGCATCACCAGCTTGGATATGCAAGCCGTGGAGCCAAACAACCAGCACCACCAGTATTGGGTTCAGAGTCGTGGCGGGGACTCGGCGGACAATTTCTGGAATGTTGAAAACATGCTTTTTTTACAGCAGCAGCTCAGTGACAATATGTAA 930 0.5258 MDMDMDTSEAGGIKGGSSCNIQNDDELDLRRGPWTVDEDLTLINYIATHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRFLWMPRLVERIQASAAASSVSPPISTITAANTPSAAYNHNNFEFGGATQITGSNFTTENSSTAASSESFGSTQLSPISDLTDYYYGGVPVGNKGNPNPDYCQTVDLSYSDSITSLDMQAVEPNNQHHQYWVQSRGGDSADNFWNVENMLFLQQQLSDNM 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0980 309 ProSiteProfiles Myb-like domain profile. 26 78 IPR001005 -
Prci4g0980 309 FunFam Myb transcription factor 31 83 - -
Prci4g0980 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 78 IPR017930 -
Prci4g0980 309 Gene3D - 28 84 - -
Prci4g0980 309 Gene3D - 88 150 - -
Prci4g0980 309 FunFam MYB transcription factor 88 151 - -
Prci4g0980 309 SMART sant 30 80 IPR001005 -
Prci4g0980 309 SMART sant 83 131 IPR001005 -
Prci4g0980 309 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 27 212 IPR044676 GO:0003700|GO:0006355|GO:0043565
Prci4g0980 309 SUPERFAMILY Homeodomain-like 28 125 IPR009057 -
Prci4g0980 309 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Prci4g0980 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Prci4g0980 309 CDD SANT 33 78 IPR001005 -
Prci4g0980 309 Pfam Myb-like DNA-binding domain 84 127 IPR001005 -
Prci4g0980 309 Pfam Myb-like DNA-binding domain 31 78 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0980 Prci-Chr4 7333292 7335402 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0980 14 295 MYB Transcription Factor Family AT3G06490 53.651 2.95e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci4g0980 Myb_DNA-binding 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0980 K09422 - gmx:100791349 352.058