Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0955 ATGGCAACAGCTGAGGCCGCTCCGGCTGCTCTTGGTCCACGATACGCACCTGATGATCCCACCCTTCCAAAACCCTGGAAGGGATTGATTGACGGAAGTACGGGTCTATTATACTATTGGAATCCTGAAACCAACATCACCCAGTATGAAAAGCCTACAGCGCTGCCACTACCCTTACCTGCTGGGCCACCTGCTGCAGCTTCTACGCCCAAGTTGGCTCCCATACCAGCGGCTCATTCAGTGCAACCTGGTGGGGTGGTGGCACAGCATGGGCAGCAGTTACTACAAACCTCTCACCAACAGGGACAGCAAATGAGCCACCTATCCCAACAGCATAGTCCCCAGGTGGCACAGGTTGCTCAGCAGCAACCTTCTCAAGGAGCACAAGCTGGACAACAACAGAGTTCACAGTCACTGCAGTCTATGCCACAACCAGGTTTGCAACAAGTCCGACAGCCGCAGATGTTACAGCCTCTGAGTCAGCAAATTCCACCACACCAAATGCATCATCAGATGCCACAACAAGCCATCCATTCACAACCTTTTGGGCAAGGAGCTACCCAGGATCATAGTTCATATATGGGACAGCCACAAGCTCATCAATTCAGTCACCAGAACCCACATTACATGCCGTATTCACAAAGCATGCACTCAAATGGGCAGCAAAGTTCCCAACCGATCCAGCATAACATGCATGGTCAGCCATTGGAAAATCAACAGGAGTTTAAAGCAGCATTCCCAAAGATAGAGGATGTAGATTTTAAAAATGGAAGTCAAGTTGGACTTTCACCATCCCAGTATCAACAAAAGAGTGCCTTGCCTCTGCAAAGCAATCAGAACATTCCTGTTGGTATTTCCTCTGTCCAGGGGCCACGTGTTGGTGTTCATGCTGGCCAAGCACAACCATTTGGTGCTTTGTCTGGTAGCATGCAGCAACCTTCTGCAGCAATTCAATCGCAGCAGGGTAGTGCTGATTTAGTTTATCAACATCGTCATAGTTTTCAAAACCAGATGGGCCCAGGAATGATGCATGGTCAGCCATCTAATGCCCATCCTGTTGACCTAAAGATGGGACATGAGGATAATTTACGTGTTAGAGCTGCGAATGAATATTACTACAACTCTGGCAAGGAGATGACATCAATGGGTTCTCAGCAGCCAAATATTGCACCAATACCTATTTCAAGAAATCAGCAGGCTTATCAGCAGGATATGAGGATCGGCAGTTCCCCTTTTCAAAATGCAACGCCTGGTGGAAATGGGGTAAATGGTGTCCCAGGGGATGGTATGCATAACATGTTTAATCCTCCGATTGGGGGCCCTCCACCAGTTGCTAGCAACTCCTTGACAAGGCCTCATGTCACTGATCTGTCACCTGCTGAAATTTACCGTCAGCAGCATGAAGTTACAGCAACGGGTGACAATGTTCCTCCCCCCTTCATGACATTTGATGCTGCTGGGTTTCCTCCAGAGATTTTGAGAGAGATCTATTCTGCGGGCTTCTCAACTCCAACACCTATTCAAGCTCAAACATGGCCTGTTGCACTACAGGGTAGGGACATAGTGGCTATTGCCAAAACAGGCTCTGGAAAGACATTGGGTTACTTAATGCCAGCATTTATGATTCTTAGACAGAGGCGTAACAATCCCCAGAATGGCCCCACAGTGTTGGTATTGGCTCCAACACGTGAACTTGCAACACAGATTCAAGATGAAGCCATAAAATTTGGCCAATCTTCAAGGGTCTCCTGCACGTGCTTGTATGGTGGGGCACCAAAAGCTCTTCAGCTAAAAGAGTTAGATCGTGGAGCAGACATTGTCGTTGCTACACCTGGCCGGCTCAATGACATACTTGAGATGAAGAAAATTGACTTTGGGCAAGTCTCACTTCTTGTGCTTGATGAGGCTGATCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATACCGCCACGCAGGCAAACTCTTATGTACACAGCAACATGGCCTAAAGAAGTACGAAAAATTGCTGGTGACCTCCTTGTTAATCCTGTCCAAGTTAATATTGGAAATGTTGATGAGCTTGCTGCAAATAAAGCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAAAGGCGTTTAGAGCAGATCATCAGAGCCCAAGAACGAGGTTCCAAGGTCATAATATTTTGTTCCACAAAGAGGTTATGTGATCAACTGGCCCGTGGCATGGGCCGTAATTTTGGAGCTGCTGCAATCCATGGAGACAAGTCTCAAGGTGAAAGAGACTGGGTTTTGAATCAGTTTAGGACTGGGAAGTCGCCAATTCTAGTTGCCACTGATGTTGCTGCCCGTGGGCTTGACATCAAGGATATAAGGGTTGTGATCAACTATGATTTCCCTAATGGAATTGAGGACTATGTGCACCGTATTGGACGAACAGGAAGGGCTGGAGCCACCGGAGTGTCATACACCTTTATCTCTGAGCAGGACTGGAAACATGCAGGTGACTTGATTAAAGTTTTGGAGGGTGCTAACCAGCTTGTGCCTCCAGAGTTACGACAGATGGCATTGCGTGGGCCAGCTAACTTTGGAAAGGATAGGGGTGGAATGAGCCGTTTTGACTCTGGTGGTGGCCGTTGGGAGTCTGGTGGCCGTGGTGGCACAAGAGATGGCGGCTTTGGCGGTCGTGGTGGCATGAGAGATGGCAGCTTTGGTGGTCGTGGTGGCATGAGAGATGGTGGTGGGTTTGGTGGTCGTGGTGGCATGAGGGATGGTCCAGGTGTGCAAGGTGGAAGAGGTGATTTCTTTCCTGGTAGGGGCAACAGGGGTCGGGGAATGGGTGGCCCTAGAGGTGGTCATGTTGGCTGGGGTAGGGGTGAACGTGACTCTCATGATCGTTACAGCATGGATGGGCGAGGACGTGGGCGTGGCCGTGGGCGTTTTGACAACAGAAGAGATATGAGTTACAGGAATAGAGGCAGAAGTTACAGCCGCAGTCCTGAAAGGGTTCGAACATGGGATTATAGCAGAAGTCGCAGTAGAAGCAGAAGCAGAACACGAAGCAGGAGTAGGAGCTGGAGTAGGGGTCGCAGTCGAAGTCGCAGCTGGTCTCGTGGCCAGAGTCGCAGTTACAGCCGGAGTTGCAGTCGCAGCCATGGCCGCAGGAGTCGAAGTTATAGCCGCAGCCGCAGCCGCAGCCGCAGTTGCGGCCGTAGTCAAAGCCACAGCAATGATAGACGTGATAGACCGGATCAACTTATTTCTGATCAGAATGAGCATAGAGCACAAGTAGAAGCTACTGAACCAAGAACAGTCACTACGTCTTCCAGGTCCCAGGGGAACTCACTTCTGGGTACTGAACATGTGGAGCGGCTACCGGATGTTGGTAGTATTGAGACAGTTAATTCAGGGGCTGTAGTGGACCCTTGCCTTCAATCAGATCCTAATGTCTAG 3462 0.4936 MATAEAAPAALGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKPTALPLPLPAGPPAAASTPKLAPIPAAHSVQPGGVVAQHGQQLLQTSHQQGQQMSHLSQQHSPQVAQVAQQQPSQGAQAGQQQSSQSLQSMPQPGLQQVRQPQMLQPLSQQIPPHQMHHQMPQQAIHSQPFGQGATQDHSSYMGQPQAHQFSHQNPHYMPYSQSMHSNGQQSSQPIQHNMHGQPLENQQEFKAAFPKIEDVDFKNGSQVGLSPSQYQQKSALPLQSNQNIPVGISSVQGPRVGVHAGQAQPFGALSGSMQQPSAAIQSQQGSADLVYQHRHSFQNQMGPGMMHGQPSNAHPVDLKMGHEDNLRVRAANEYYYNSGKEMTSMGSQQPNIAPIPISRNQQAYQQDMRIGSSPFQNATPGGNGVNGVPGDGMHNMFNPPIGGPPPVASNSLTRPHVTDLSPAEIYRQQHEVTATGDNVPPPFMTFDAAGFPPEILREIYSAGFSTPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFMILRQRRNNPQNGPTVLVLAPTRELATQIQDEAIKFGQSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKAITQYVEVVPQMEKQRRLEQIIRAQERGSKVIIFCSTKRLCDQLARGMGRNFGAAAIHGDKSQGERDWVLNQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPNGIEDYVHRIGRTGRAGATGVSYTFISEQDWKHAGDLIKVLEGANQLVPPELRQMALRGPANFGKDRGGMSRFDSGGGRWESGGRGGTRDGGFGGRGGMRDGSFGGRGGMRDGGGFGGRGGMRDGPGVQGGRGDFFPGRGNRGRGMGGPRGGHVGWGRGERDSHDRYSMDGRGRGRGRGRFDNRRDMSYRNRGRSYSRSPERVRTWDYSRSRSRSRSRTRSRSRSWSRGRSRSRSWSRGQSRSYSRSCSRSHGRRSRSYSRSRSRSRSCGRSQSHSNDRRDRPDQLISDQNEHRAQVEATEPRTVTTSSRSQGNSLLGTEHVERLPDVGSIETVNSGAVVDPCLQSDPNV 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0955 1153 Pfam WW domain 22 52 IPR001202 GO:0005515
Prci4g0955 1153 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 453 859 - -
Prci4g0955 1153 SMART ww_5 21 54 IPR001202 GO:0005515
Prci4g0955 1153 MobiDBLite consensus disorder prediction 1051 1067 - -
Prci4g0955 1153 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Prci4g0955 1153 MobiDBLite consensus disorder prediction 95 151 - -
Prci4g0955 1153 MobiDBLite consensus disorder prediction 336 355 - -
Prci4g0955 1153 MobiDBLite consensus disorder prediction 163 232 - -
Prci4g0955 1153 MobiDBLite consensus disorder prediction 258 275 - -
Prci4g0955 1153 MobiDBLite consensus disorder prediction 1103 1121 - -
Prci4g0955 1153 Gene3D - 691 861 IPR027417 -
Prci4g0955 1153 SMART helicmild6 740 820 IPR001650 -
Prci4g0955 1153 Pfam DEAD/DEAH box helicase 505 675 IPR011545 GO:0003676|GO:0005524
Prci4g0955 1153 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 481 509 IPR014014 GO:0003724
Prci4g0955 1153 SUPERFAMILY WW domain 14 54 IPR036020 GO:0005515
Prci4g0955 1153 MobiDBLite consensus disorder prediction 256 275 - -
Prci4g0955 1153 MobiDBLite consensus disorder prediction 1075 1102 - -
Prci4g0955 1153 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 512 686 IPR014001 -
Prci4g0955 1153 MobiDBLite consensus disorder prediction 304 324 - -
Prci4g0955 1153 Gene3D - 16 54 - -
Prci4g0955 1153 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Prci4g0955 1153 MobiDBLite consensus disorder prediction 1018 1034 - -
Prci4g0955 1153 FunFam probable ATP-dependent RNA helicase DDX17 447 689 - -
Prci4g0955 1153 SMART ultradead3 500 703 IPR014001 -
Prci4g0955 1153 Gene3D - 457 690 IPR027417 -
Prci4g0955 1153 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 632 640 IPR000629 -
Prci4g0955 1153 MobiDBLite consensus disorder prediction 958 1017 - -
Prci4g0955 1153 FunFam ATP-dependent RNA helicase RhlB 690 862 - -
Prci4g0955 1153 MobiDBLite consensus disorder prediction 862 1121 - -
Prci4g0955 1153 MobiDBLite consensus disorder prediction 1035 1050 - -
Prci4g0955 1153 Pfam Helicase conserved C-terminal domain 712 820 IPR001650 -
Prci4g0955 1153 CDD WW 23 53 IPR001202 GO:0005515
Prci4g0955 1153 CDD SF2_C_DEAD 700 829 - -
Prci4g0955 1153 MobiDBLite consensus disorder prediction 1 25 - -
Prci4g0955 1153 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 715 859 IPR001650 -
Prci4g0955 1153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 552 835 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0955 Prci-Chr4 6941865 6949381 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0955 469 858 Eukaryotic Initiation Factors Gene Family AT3G19760 33.760 1.18e-67 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0955 K12823 - gmx:100807830 1231.08