Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0938 ATGGAGGCTAAATTTCGGGGTAAGAATCAGTATGTCTATGGAACTGTGGTACCGGAAATTAAAGCGGTTGGAAAGAAGAGTTTGGAGTGGAATTTGGAAGACTGGAAATGGGACGGAGATCTTTTCACTGCTAGTCCACTAAATCCAGTTCCATCTGATTGCAGAAATAAGCAGTCTTTCCCAGTTGATCCAGAAATTCCTGCGAAAGCTAATACTTCTAACATTGCATCTTCTAATTGGGATGATGTCAATCCGGAGAAAGGAAAGAGAGAATTGGAGAAAAGGAGGAGAGCTGTTATATCTGAAGGCGTTGAGCTGAATGATGAAGCTGGCTGTCTTAATTTAAACCTTGGAGCTCAAATTTACCCTATCATGGAAGGAGATGAAAAAAGTGGAAAGAAGACAAAGATAGTTGGGAGTGGGACTTCTTCAAACAGAGCGGTTTGTCAGGTGGAAGATTGTAGGGCCGATCTTAGTAATGCAAAAGATTACCACCGTCGGCATAAGGTTTGTGATATGCATTCTAAGGCCAGCAAAGCACTGGTAGGAAATGTCATGCAGCGTTTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGACGGGAAAAGAAGTTGTCGGAGGCGTTTGGCAGGCCATAATAGGAGGAGGAGGAAGACACATCCTGATGCTGTTGTTAATGGAGGCTCCCTGAATGATGAAAGTGGCAGCAGTTATCTGTTAACAAGTCTTCTCCGTATATTGTCCGATATGCACTCAAATGGATCAGATGCTACTAGGGACCAAGATATTCTCTCTCATCTACTAAGGAATCTGGCAAGTTTGGCTGGTACAATCAATGGAAGGAACATAGCCTCCTTATTGGAGGGAACCCAAGGTTTGGTGAATGCTGGGACATCTGGAACTTCCCAAAAAGTGCCTAATCTAAATTCAAATGGTCCTGAACCCATCAGATCTCCTGGTTCTTCCGCCAAGACAGATAATGGTATCAGCAGTCGGGACCCTCCAAAGGCAATGGGACAGTCTGAGACAGTGCCTGCATATGATATGGTGCAAAAATGTTTACCTTCTGGTGATGTTGCGGTTGGAAGTTTAAAGTCTCCTTCAGGCTCACAGCCTTCAAATGTACTTCTATCAAGGGGTAGCCTTCCATCCCAATCAGTCGCAGCAGAGACTACAGTTAGAAGGAATGGTTTAAATCACATTGACCTCAATAATGTATATGATGACATACAAGATGATGCTGAGAACATTAGGAAGTCTCATCCACCTGAGGCTTCCGGTTTTGGTTCTCTTGATCATCCTTCATGGCTACAACTTGACACTCAAAAGTCAAGTCCCCCACAGACAAGCATAAACTCAGATTCAACCTCCTCTCAATCACCTTCTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTCAAACTCTTTGGCAAGGATCCGAATGATTTTCCTCTTGTTCTTCGATCACAGATTCTCAGCTGGTTATCCCACAGTCCCACAGAGATTGAGAGCTACATAAGGCCAGGCTGTATCATATTAACAGTATATCTGTGTCTAGAAAAATCTGCATGGGAGGAGCTTTGCTGTAATTTAGGACTCAACTTGAAAAAGCTTGTTGCTGCATCAAATGATTCTTTCTGGAGGACCGGGTGGGTATACACTAGGGTGCGGCATTCTGTAGCCTTTCTGTACGATGGTGAAGTTGTTTTAGATGTTCCCTTGAGCCTTAGAAGCCCACAACATTGTAGGATTTCAAGTATTAAGCCACTTGCTGTTTCTTCAAAGGCAAGCACTCAATTTGTTGTTAAAGGTGTCAACCTTTTCCATTCTAGCACAAGGTTACTCTGCGCGCTTGAAGGGAAGTATCTGGCACAGTATAGTTGTTGTGACTTGATTGATGGTGTTGACACAGCTATTGAACATGATGAGCATCAATACCTCAGCTTCTCTTGTACTATACCAAGTGTTACTGGGAGGGGATTTATTGAGGTGGAAGATCATGGTCTTAGTGGCTCTTCCTTTCCTTTTATTGTTGCGGAGCCAGAAATTTGTACAGAGATCTGCGATCTGGAGAGTGTGATTGAGGCAGCTGAGATTTGTGAAGATGTACAAATGAGAAGGAAACAGATGGAAGAAAAGACTCGAGCCTTGGATTTCATACAAGAAATGGGGTGGCTCCTTCATAGAAGTCGTGTGAAAGCTAGGCTGGGTCCCATTGCACCCTTCCAGGATCTGTTCCATTTCAATCGGTTCAAGTGGCTTGTTGACTTCTGCATGGACCATGATTGGTGTGCCGTGATGAAAAAGCTTCTAGACATTATGTTTGAGGGTACTGTTGATGCCGGGGAGCATGCCTCTGTCCAGCTTGCATTGTTAGACTTGGGTCTGCTACATAGAGCTGTGAGTAGAAATTGCAGGCCCATGGTGGAACTACTGTTGAAATTTGCACCAGTTCAAACTTCTGATGACGACAGTAAGGAGAAACAAGCTGGCAAGAACTCTGAAAGATTCTTATTTAAACCTGATAGTGTTGGCCCTGCTGGTTTGACTCCCCTACATGTCGCTGCAAGCATGCATGGCTCAGAGAATGTATTAGATGCATTAATTGATGATCCTGGAATGGTGGGAATCAAGGCATGGAAAAGTGTCCGAGACAACACAGGTTCGACCCCAGAGGACTACGCATCCATGAGGGGCTACCACTCCTACATTCAACTTGTCCAGACAAAAACAAGCAAGAAAAGTGATGAATCTCATCATCATCACGTGGTTGACATCCCATCTTCCCTTGTAGATAGTAACACGAAGAAGCAAAAGTCATTGTCGAAAGCTTCCAGCTTGCAAACCGAGAGGATTGACATGGCGGCATCGACAGTTCCACACCAGTGCGGGCTATGTCAGCACAAGCTGGCTTGTCACAGCACTAGAACGGCTCTGGTTTATAGGCCAGCAATGCTCTCGATGGTGGCCATTGCAGCTGTGTGTGTCTGTGTGGCATTGCTCTTCAAAAGCTCACCTCAAGTCTCCTATGTCTTCCAGCCCTTCAGATGGGAATCATTAGATTATGGCTCCATGTAG 3102 0.4452 MEAKFRGKNQYVYGTVVPEIKAVGKKSLEWNLEDWKWDGDLFTASPLNPVPSDCRNKQSFPVDPEIPAKANTSNIASSNWDDVNPEKGKRELEKRRRAVISEGVELNDEAGCLNLNLGAQIYPIMEGDEKSGKKTKIVGSGTSSNRAVCQVEDCRADLSNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDDGKRSCRRRLAGHNRRRRKTHPDAVVNGGSLNDESGSSYLLTSLLRILSDMHSNGSDATRDQDILSHLLRNLASLAGTINGRNIASLLEGTQGLVNAGTSGTSQKVPNLNSNGPEPIRSPGSSAKTDNGISSRDPPKAMGQSETVPAYDMVQKCLPSGDVAVGSLKSPSGSQPSNVLLSRGSLPSQSVAAETTVRRNGLNHIDLNNVYDDIQDDAENIRKSHPPEASGFGSLDHPSWLQLDTQKSSPPQTSINSDSTSSQSPSSSSGEAQSRTDRIVFKLFGKDPNDFPLVLRSQILSWLSHSPTEIESYIRPGCIILTVYLCLEKSAWEELCCNLGLNLKKLVAASNDSFWRTGWVYTRVRHSVAFLYDGEVVLDVPLSLRSPQHCRISSIKPLAVSSKASTQFVVKGVNLFHSSTRLLCALEGKYLAQYSCCDLIDGVDTAIEHDEHQYLSFSCTIPSVTGRGFIEVEDHGLSGSSFPFIVAEPEICTEICDLESVIEAAEICEDVQMRRKQMEEKTRALDFIQEMGWLLHRSRVKARLGPIAPFQDLFHFNRFKWLVDFCMDHDWCAVMKKLLDIMFEGTVDAGEHASVQLALLDLGLLHRAVSRNCRPMVELLLKFAPVQTSDDDSKEKQAGKNSERFLFKPDSVGPAGLTPLHVAASMHGSENVLDALIDDPGMVGIKAWKSVRDNTGSTPEDYASMRGYHSYIQLVQTKTSKKSDESHHHHVVDIPSSLVDSNTKKQKSLSKASSLQTERIDMAASTVPHQCGLCQHKLACHSTRTALVYRPAMLSMVAIAAVCVCVALLFKSSPQVSYVFQPFRWESLDYGSM 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0938 1033 FunFam Squamosa promoter-binding-like protein 14 140 210 - -
Prci4g0938 1033 Pfam SBP domain 149 222 IPR004333 GO:0003677
Prci4g0938 1033 Gene3D - 791 940 IPR036770 -
Prci4g0938 1033 ProSiteProfiles Zinc finger SBP-type profile. 146 223 IPR004333 GO:0003677
Prci4g0938 1033 MobiDBLite consensus disorder prediction 301 345 - -
Prci4g0938 1033 MobiDBLite consensus disorder prediction 365 392 - -
Prci4g0938 1033 MobiDBLite consensus disorder prediction 936 954 - -
Prci4g0938 1033 MobiDBLite consensus disorder prediction 367 392 - -
Prci4g0938 1033 Gene3D - 139 210 IPR036893 GO:0003677|GO:0005634
Prci4g0938 1033 MobiDBLite consensus disorder prediction 421 474 - -
Prci4g0938 1033 MobiDBLite consensus disorder prediction 922 954 - -
Prci4g0938 1033 SUPERFAMILY SBT domain 147 228 IPR036893 GO:0003677|GO:0005634
Prci4g0938 1033 MobiDBLite consensus disorder prediction 62 90 - -
Prci4g0938 1033 MobiDBLite consensus disorder prediction 439 474 - -
Prci4g0938 1033 MobiDBLite consensus disorder prediction 214 234 - -
Prci4g0938 1033 SUPERFAMILY Ankyrin repeat 803 914 IPR036770 -
Prci4g0938 1033 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 99 842 IPR044817 GO:0003677
Prci4g0938 1033 MobiDBLite consensus disorder prediction 301 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0938 Prci-Chr4 6868433 6875842 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0938 1 1032 SBP-box Gene Family AT3G60030 47.555 0.0 831
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci4g0938 SBP 8.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0938 - - gmx:100776125 1454.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g0938 4 6868433 6875842 Prci4g0938 4 6868433 6875842 ECH