Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0905 ATGGAACTGGACGACTGGGACCTGAGCGCAGAGGATCTTGATTATCTCGAAAAAGACGCCTTCCAAAAGATTGCACAACTACGCAACCCCTCTTGCTCTGCGTTTGTTTCTTCTTCCACTCCTTCCAACAGTCAACGAGTGAATGTACACCAACAGCATTCTGCAAAACCTCATGGCAAAGACTTGGAACGATCCCCTGCAAAACCCATTTCTGATTCTCGTCCTGAAAGAGTAGAAGCTTTGTCTCCACAGTCTAGAGCGTTACCCTCGTCATCAAAATCAGGAACAAACAACGATGATCATTCAACAGAAATTCCAAAGGTTTCTGTTAAACTGTTTCTTCATTCCTGTGGAGATATTGCGGCAAAGTTTCAATATAACCAGGCAGTAATAGCTGCTATAAGGAGAGTCCCCAAGTCTACTTGGAATGCAAGAGAAAGGTTATGGATGTTCCCACTATCTTCTTTGTCAGCAGCTGAAAAGGTTCTCGCTGAAATTTCTGGTAATAATGTTCAGGTTGATAACCTAGACCCCCTAGTGCACCGGGCCATTGCTGCTGCATCTGCTGTGCCTGATCTTCGAGATCGATATGACAAGATCCCTAGCTATGTTGAATCAAAACTTTTGCCATTTCAGCGAGAAGGGATTAGGTTTATATTGCAGCATGGAGGGCGAGCTCTTTTAGCTGATGAAATGGGACTAGGGAAAACTTTGCAGGCCATTGCTGTAACTTCATGCATTTCTGAGTCATGGCCTGTGCTCATACTTGCACCATCTTCATTACGGTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTGTTGTGCTATCTCAAAGTGGTGGATCAAATAAAGGAGGCTTCACTATAGTATCTTCAAATACAAAAAACAGCATCCATCTAGATGGAGTGTTCAACATCATCTCCTACGATCTGGTTCCAAAGCTACAGAATATGCTTGTGGCATCTGACTTTAAGGTAGTGATTGCAGATGAGTCACACTTTCTAAAAAATGCTCAAGCAAAGAGAACTACTGCTTCTCTTCCAGTTATAAAGAAAGCTCAATATGCAATGTTGCTTAGTGGAACTCCTGCCTTGTCCCGACCAATTGAACTATTCAAGCAGCTGGAAGCATTGTATCCTGATGTTTATAAAAACGTCCATGAATATGGTAACAGATACTGCAAGGGTGGATTATTTGGACTATACCAAGGTGCAAGTAATCATGAAGAATTGCACAATTTGATGAAGGCAACAGTGATGATTCGCAGGCTTAAAAAGGATGTTCTTTCTCAACTTCCTGTAAAACGCAGGCAACAGGTCTTCCTAGATTTGGATGCCAAGGACATGAAGCAAATCAATGCCTTATTTCGGGAGTTGGAGGTTGTTAAAGCCAAAATTAAGGCATCCAAATCAAAAGATGAGGCTGAAGCGCTTAAGTTTACTCAAAAGAATCTTATTAACAAGATATATACTGAGTCTGCTGAAGCCAAGATCCCAGCGGTTCTTGATTATATGGGAACTGTTATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAGCCAATGATGGATTCAATATATGATTTTCTTATTAAAAAAAAGGTGGGTTGCATACGCATTGATGGCAACACAGCCCCTGCATCTAGGCAAGCGTTGGTTACAGATTTTCAGGAAAAGGATTCTATCAAGGCAGCTGTGCTATCTATCAAAGCTGGAGGAGTTGGGTTAACTTTAACTGCCGCAAGTACTGTCATTTTTGCGGAACTATCCTGGACCCCAGGTGACCTAATTCAAGCTGAAGATCGTGCTCATAGAATTGGCCAGGTATCTTCGGTAAATATATACTACTTGCTAGCAAATGACACAGTCGATGACATCATATGGGATGTAGTGCAGAGCAAATTGGAAAATTTGGGACAGATGTTAGATGGCCATGAGAACACCATGAAAGTCGCAGCCAATCAGCCAGGGAATAGCCCTGCAAAGCAGCAAACTCTTGACACCTTTGTGAAAAGATGTAATAACATGGATGTGCCAGAACAGCAGCCCAACCTCAAACGCCCCCGACACTGA 2103 0.4232 MELDDWDLSAEDLDYLEKDAFQKIAQLRNPSCSAFVSSSTPSNSQRVNVHQQHSAKPHGKDLERSPAKPISDSRPERVEALSPQSRALPSSSKSGTNNDDHSTEIPKVSVKLFLHSCGDIAAKFQYNQAVIAAIRRVPKSTWNARERLWMFPLSSLSAAEKVLAEISGNNVQVDNLDPLVHRAIAAASAVPDLRDRYDKIPSYVESKLLPFQREGIRFILQHGGRALLADEMGLGKTLQAIAVTSCISESWPVLILAPSSLRLQWASMIQQWLNIPSSDILVVLSQSGGSNKGGFTIVSSNTKNSIHLDGVFNIISYDLVPKLQNMLVASDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYAMLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGLFGLYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLDAKDMKQINALFRELEVVKAKIKASKSKDEAEALKFTQKNLINKIYTESAEAKIPAVLDYMGTVIEAGCKFLIFAHHQPMMDSIYDFLIKKKVGCIRIDGNTAPASRQALVTDFQEKDSIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENTMKVAANQPGNSPAKQQTLDTFVKRCNNMDVPEQQPNLKRPRH 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0905 700 Gene3D - 184 437 IPR038718 -
Prci4g0905 700 MobiDBLite consensus disorder prediction 84 102 - -
Prci4g0905 700 CDD DEXHc_HARP_SMARCAL1 208 431 - -
Prci4g0905 700 MobiDBLite consensus disorder prediction 33 52 - -
Prci4g0905 700 SMART helicmild6 534 617 IPR001650 -
Prci4g0905 700 Coils Coil 645 665 - -
Prci4g0905 700 CDD SF2_C_SNF 504 628 - -
Prci4g0905 700 Pfam Helicase conserved C-terminal domain 516 617 IPR001650 -
Prci4g0905 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 431 IPR027417 -
Prci4g0905 700 Gene3D - 470 692 IPR027417 -
Prci4g0905 700 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 217 389 IPR014001 -
Prci4g0905 700 MobiDBLite consensus disorder prediction 54 75 - -
Prci4g0905 700 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 509 660 IPR001650 -
Prci4g0905 700 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 687 - -
Prci4g0905 700 FunFam Chromatin remodeling factor18 466 696 - -
Prci4g0905 700 FunFam Chromatin remodeling factor18 181 455 - -
Prci4g0905 700 MobiDBLite consensus disorder prediction 33 102 - -
Prci4g0905 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 330 661 IPR027417 -
Prci4g0905 700 Pfam SNF2-related domain 226 488 IPR000330 GO:0005524|GO:0140658
Prci4g0905 700 ProSiteProfiles HARP domain profile. 104 178 IPR010003 -
Prci4g0905 700 SMART ultradead3 204 397 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0905 Prci-Chr4 6663511 6674966 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0905 507 657 RAD5 or RAD16-like Gene Family AT1G11100 34.437 2.01e-17 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci4g0905 SNF2_N 6.1e-29 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0905 K14440 - qsa:O6P43_021950 1098.19