Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0898 ATGAGAACAGGAGAACAAGTCGATGGCCAGCAAACCCAGTCATCATCGTCATCTTCTTCTTCAATTGATAGCAGTAATTACCCTTGTGGGACTGCGAAACCTGCAGCTTCTTCTTCTCACTCTTCCTCTTCGTGTCTCTCAAGTGTTTGTGGAAATACCAGTAGTTCCAGAACTGATTTGATCACTGACCTGAGACTTGGTCTTACCATTTCTCCTTCTCAACCTGGCTTTTCCAATTCAAATCCCAGGAATCATACTTCAGATTGGCCTCCAATCAAGTCCATACTGAGAAGCACTCTTGTGGAGAAACAAAACCAGTGGAGCGAAGGGCCTTCCTTATTTGTCAAAGTGTACATGGAAGGCATACCCATTGGTAGAAAATTGAACCTTCTGGCACACCATAGTTATGATGGGCTTGTCAGAGCTCTAGGTCACATGTTCAGGACCACCATTCTCTGCCCCAATTCCCAAGCACTTCATTCTGGAAATTTTCATGTGTTAACTTACGAGGATCAAGAAGGAGACTGGATGATGGTTGGAGATGTGCCTTGGGAGATGTTCTTGACTAGTGTGAAAAGGCTGAAGATCACCAGAGCAGACAGATGCTAG 609 0.4483 MRTGEQVDGQQTQSSSSSSSSIDSSNYPCGTAKPAASSSHSSSSCLSSVCGNTSSSRTDLITDLRLGLTISPSQPGFSNSNPRNHTSDWPPIKSILRSTLVEKQNQWSEGPSLFVKVYMEGIPIGRKLNLLAHHSYDGLVRALGHMFRTTILCPNSQALHSGNFHVLTYEDQEGDWMMVGDVPWEMFLTSVKRLKITRADRC 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0898 202 Pfam AUX/IAA family 77 198 IPR033389 -
Prci4g0898 202 Gene3D - 107 202 - -
Prci4g0898 202 ProSiteProfiles PB1 domain profile. 112 201 IPR000270 GO:0005515
Prci4g0898 202 MobiDBLite consensus disorder prediction 1 44 - -
Prci4g0898 202 SUPERFAMILY CAD & PB1 domains 104 196 - -
Prci4g0898 202 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 61 200 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0898 Prci-Chr4 6604983 6607757 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0898 115 202 B3 DNA Binding Superfamily AT2G46530 34.091 1.12e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Prci4g0898 AUX_IAA 1e-33 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0898 K14484 - gmx:100527448 266.929