Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0883 ATGGCTTCCTCCACCCTCAAACTCTTCCTCCTTCTCTTCCCAATCTTCATCTCACCCGCTTGCGCCTCTCCTACAACAAAACTACCTCCAAATCTCACTTCCATAAGATCTTTCTGCCGAACCACCCCATATCCAGAAGCTTGCTTCGATTCTCTGAAGCTCGGCATTTCTATCAACATAAGCCCAAACATCCTCACCTACCTGCTTCAGTCTCTGCAAGTTGCCATATCCGAAGCCACCCATCTCTCCGATCTATTCCACAATGCAGGAGGCCATCCAGGTTCCAACCTCGTGGAGAAGCAGAGAGGGTCAATTCAAGACTGTAGGGAGCTTCATCTCTCAACCTTGACTTCTCTCAAAAGATCCCTCTCTGGGGTTCGTGATTCTCCCACTTCTGCCAGGAAGCTCGCCGATGCTAGAGCCTACCTCAGCGCCGCCATGACCAACAAGAACACTTGCCTGGAAGGTCTCGACTCTACTGCGGGCTCCCTTAAGCCTGTTCTTGTCCACTCTACCATCAAAACCTACAAACACGTCAGCAATTCTCTGTCCATGCTCCCTAAGCCAGGGTTAAGAGGTTCCAGAGGCAATAAGAACCGGCGTCGCTTGCTGGGAGCTCCGGCGTGGCTGAAGAGGAAGGACCGTCGGATCTTGGAGAGCTCGGACGGGGAAGAATACGATCCGGATGAGATGCTTGTGGTGGCGGCGGATGGAACCGGGAACTTCAGCACCATTACTGAAGCTGTGAACTTTGCTCCCAATAATAGCTTGTACAGGACTGTGATCTATGTGAAGTCAGGGGTTTACGAGGAAAATGTGGACATCCCAAGTTACAAGACCAACGTTGTTCTGCTTGGAGATGGAAGCGATGTCACTCTCATTACCGGTAACAGAAGCGTGGGCGATGCGTGGACCACTTTCAGATCTGCAACTCTAGCTGTGTCCGGTGACGGCTTTCTGGCACGAGACATAGCGATAGAAAACAGTGCAGGGCCAGAGAAGCACCAAGCAGTTGCGTTGAGAGTAAACGCGGACTTAATTGCGCTGTACAGATGCGCCGTTTATGGCTACCAAGACAGCCTCTACGTTCACTCCTTCCGACAGTTCTACAGAGAATGTGACATCTACGGCACCATAGACTTCATCTTCGGAAACGCAGCCGCCGTTTTCCAGGCCTGCGACATCGTTTCGAGAAAGCCGCTTCCTCACCAGTTCACCATCATCACGGCTCAATCCCGAGACTCGCCTGACGAGGACACCGGAATCTCAATCCAGAATTGCTCCATCATAGCCTCCCAGGACCTGTATTCGAATTCTAGAAGCTTCAAGAGCTACCTCGGACGCCCATGGAGGCCCTACTCGCGGACTGTGTATCTAGAGTCTTACATCGATGACTTCGTGGACCCAAAGGGGTGGACGGAATGGTCTGATTCTGATGGCGATGATTTGGAGACTTTGTACTATGGGGAGTACGACAATTATGGGCCGGGTTCGGGTACTGGTGGGAGGGTGAACTGGGTTGGGTACCATGTGCTGGGTTATGAGGATGCTTATAATTTTACCGTTTCTCAGTTCATTATGGGTGATGCTTGGCTTCAGTCCACTTCTTTCCCCTATGACGCTGGGATTTGA 1632 0.5153 MASSTLKLFLLLFPIFISPACASPTTKLPPNLTSIRSFCRTTPYPEACFDSLKLGISINISPNILTYLLQSLQVAISEATHLSDLFHNAGGHPGSNLVEKQRGSIQDCRELHLSTLTSLKRSLSGVRDSPTSARKLADARAYLSAAMTNKNTCLEGLDSTAGSLKPVLVHSTIKTYKHVSNSLSMLPKPGLRGSRGNKNRRRLLGAPAWLKRKDRRILESSDGEEYDPDEMLVVAADGTGNFSTITEAVNFAPNNSLYRTVIYVKSGVYEENVDIPSYKTNVVLLGDGSDVTLITGNRSVGDAWTTFRSATLAVSGDGFLARDIAIENSAGPEKHQAVALRVNADLIALYRCAVYGYQDSLYVHSFRQFYRECDIYGTIDFIFGNAAAVFQACDIVSRKPLPHQFTIITAQSRDSPDEDTGISIQNCSIIASQDLYSNSRSFKSYLGRPWRPYSRTVYLESYIDDFVDPKGWTEWSDSDGDDLETLYYGEYDNYGPGSGTGGRVNWVGYHVLGYEDAYNFTVSQFIMGDAWLQSTSFPYDAGI 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0883 543 PANTHER PECTINESTERASE 16 533 - -
Prci4g0883 543 SMART PMEI_2 30 185 IPR006501 GO:0004857
Prci4g0883 543 SUPERFAMILY Pectin lyase-like 230 541 IPR011050 -
Prci4g0883 543 Gene3D - 227 543 IPR012334 -
Prci4g0883 543 FunFam Pectinesterase 226 543 - -
Prci4g0883 543 Pfam Pectinesterase 232 529 IPR000070 GO:0030599|GO:0042545
Prci4g0883 543 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 188 IPR035513 -
Prci4g0883 543 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 186 IPR035513 -
Prci4g0883 543 Pfam Plant invertase/pectin methylesterase inhibitor 34 185 IPR006501 GO:0004857
Prci4g0883 543 CDD PMEI-like_3 37 185 - -
Prci4g0883 543 NCBIfam pectinesterase inhibitor domain 6 186 IPR006501 GO:0004857
Prci4g0883 543 FunFam Pectinesterase 31 188 - -
Prci4g0883 543 ProSitePatterns Pectinesterase signature 2. 375 384 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0883 Prci-Chr4 6475584 6478244 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0883 28 543 Carbohydrate Esterase AT2G26440 68.582 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0883 - - gmx:100776969 814.683