Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0878 ATGATGTTCAATGCTCAGGGCCCTTCAAAAAAATCTAGTCTCCTTGCCATCCTCAGTGGAAATTCATGTGACAATAAACAAAAGCATAGACAGTATGATTTTCAGGATCAATCTCCATACCCCATTCCAGAGCTTACTTCATATGGGCGTCTTGAGGTTAATGTTTTGATCAAACCAACTGCTGATGAACTTCATCGAGTTTATGAAGCATTGGAGCCAAAGTTTGTTTACCTGCAAGGCGAGCAGCTAGAAGATAATGAACAAATTGGGTCCCTACTATGGGAAGATGTTGATCTGTCTTGCCCAGAAGCCTTATGTGGTTTATTTTCTTCCAAATTACCCAATACTGTTTATTTGGAAACTCCTAAAGGAGAAAATTTGGCAGAGGCTCTCCATTCTAAGGGAATTCCTTACACTATATATTGGAAAAGCGAATTTTCAAAGTATGCTGCATCACATTTTCGTCAAGCCTTTTTCTCAGTGGCACAAAGTACCTCCAGCCATACATGGGATGCTTTCCAGCTTGCTCTTGCATCTTTCAGATTATACTGTACAGAAAACAATGTCTCACCTTCAAACAGCATGAAGAGCAGAAGCAAGCTTGAGCCGCAGATGTTTGGTGACCCTCCTCACATTGATATTACTCCTTTTGAAGCAGACATGAGTGGGGAAGAAAACTCACCTGAGACTATTTCTGCTCTGAAGATTTATGATGATGATGTCAACATGAGAGTTCTTCTGTGTGGAGTTCCCTGCATGCTGGAGACTTGCTTATTGGGATCATTGGAGGACGGACTCAATGCTCTCCTGTGTACAGAAATACGTGGATGTAAACTTCACAACCGGACAAGTGCTCCACCACCTCCTCTTCAGGCAGGGACATTCTCACGTGGTGTGGTGACCATGCGTTGTGATATATCCACATGTAGTTCTGCTCATATATCACTCTTGGTGTCTGGTAGCGCAGATACATGCTTTAATGATCAGCTTTTGGAGAACTATATAAAAAAGGAGCTGATTGAGAAGAGTCAACTAGTTCAGGCATCACCTAATTGTGAACAAAGCAACTTACCTTCCTCCGAGCCTCGAAGGTCAGCCTCGATAGCTTCTGGGGCTAGTGTATTTGAAGTTTGCTTGCAGGTCCCTACATGGGCTTCACTGGTTCTGAGACAGCTTGCACCAGAAGTGTCGTACCGCAGCCTGGTTATGCTGGGAGTAGCCAGTGTTCAAGGATTGCCTGTTGCATCATTTAAAAAAGTTGATGCGGAACGTCTCCTTTACTTTTGTTCAAGGCAGTCAGAAAAAAATTGCCTTAATGACTCCATTTCTGTTGGGCATCCTAGTTGGCTGATACCTCCACCACCTACTCGAAAAAGAACAGAGCCTTTCTTTGGAATAAAGTCTTTCAATTCTTGTAGCCTTCAAGACAGTTATAGTGGTAACAATAGACAGAAATTGAACATTGCTGCAATGAGACCAATCCCTCAATCACATCGTCAGAAGATTCAACCTTTTTCTGGATTGTCTGAGGGGGAGAGGTTTGATGGAGAACGTGGAAAATCAAATCTGCCAATGGCTCCAACAAAGCATAATGGTATAGGCTCTAATCCAGTCACAAATAGGAAATCTTCGTCAACTTCCTTTCAGGCTCAGCAGATCGTCACATTAAATCCACTACCAATGAAGAAGCATGGTTGTGACAGAGCTCCAATACGGACCTGTTCAGAGGAGGAATTCTTGAGGGATGTAATGCAGTTTCTTATCCTTCGTGGGCATTCTCGGCTAATTCCACAGGGTGGTCTTTCTGAATTCCCTGAAGCCATTCTGAATGCTAAACGCCTAGATCTTTTTAACTTGTACAGAGAGGTGGTATCTAGAGGAGGGTTTCATGTTGGGAATGGCATCAATTGGAAAGGGCAAGTTTTCTCAAAGATGCGAAATCACACTTTGACTAATAGAATGACAGGTGTTGGCAATACACTTAAAAGACATTATGAAACTTATCTTCTAGAGTATGAACTGGCTCATGATGACGTAGACGGAGAGTGCTGCTTGTTGTGCCGCAGTAGCGCAGCTGGTGATTGGGTGAATTGTGGGATATGCGGTGAGTGGGCTCACTTTGGCTGTGATAGGCGTCAAGGACTTGGCGCATTTAAGGACTATGCTAAAACTGATGGGCTAGAGTACGTTTGCCCACATTGCAGCATCTCAAATTTCAGAAAGAAATCCCAGAAAACTTCAAACGGATATTAA 2253 0.431 MMFNAQGPSKKSSLLAILSGNSCDNKQKHRQYDFQDQSPYPIPELTSYGRLEVNVLIKPTADELHRVYEALEPKFVYLQGEQLEDNEQIGSLLWEDVDLSCPEALCGLFSSKLPNTVYLETPKGENLAEALHSKGIPYTIYWKSEFSKYAASHFRQAFFSVAQSTSSHTWDAFQLALASFRLYCTENNVSPSNSMKSRSKLEPQMFGDPPHIDITPFEADMSGEENSPETISALKIYDDDVNMRVLLCGVPCMLETCLLGSLEDGLNALLCTEIRGCKLHNRTSAPPPPLQAGTFSRGVVTMRCDISTCSSAHISLLVSGSADTCFNDQLLENYIKKELIEKSQLVQASPNCEQSNLPSSEPRRSASIASGASVFEVCLQVPTWASLVLRQLAPEVSYRSLVMLGVASVQGLPVASFKKVDAERLLYFCSRQSEKNCLNDSISVGHPSWLIPPPPTRKRTEPFFGIKSFNSCSLQDSYSGNNRQKLNIAAMRPIPQSHRQKIQPFSGLSEGERFDGERGKSNLPMAPTKHNGIGSNPVTNRKSSSTSFQAQQIVTLNPLPMKKHGCDRAPIRTCSEEEFLRDVMQFLILRGHSRLIPQGGLSEFPEAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCRSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISNFRKKSQKTSNGY 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0878 750 ProSiteProfiles ARID domain profile. 573 677 IPR001606 GO:0003677
Prci4g0878 750 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 750 IPR042293 -
Prci4g0878 750 MobiDBLite consensus disorder prediction 508 543 - -
Prci4g0878 750 Gene3D - 566 678 IPR036431 GO:0003677
Prci4g0878 750 CDD PHD_ARID4_like 683 734 - -
Prci4g0878 750 SUPERFAMILY ARID-like 573 687 IPR036431 GO:0003677
Prci4g0878 750 CDD ARID 575 673 - -
Prci4g0878 750 MobiDBLite consensus disorder prediction 528 543 - -
Prci4g0878 750 SUPERFAMILY FYVE/PHD zinc finger 669 737 IPR011011 -
Prci4g0878 750 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 679 735 IPR013083 -
Prci4g0878 750 Pfam ARID/BRIGHT DNA binding domain 576 673 IPR001606 GO:0003677
Prci4g0878 750 SMART ARID_2 570 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0878 Prci-Chr4 6432107 6441185 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0878 2 749 ARID Transcription Factor Family AT3G43240 64.276 0.0 960
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Prci4g0878 ARID 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0878 - - pcin:129299877 1207.59