Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0877 ATGATGTTCAATGCTCAGGGCCCTTCAAAAAAATCTAGTCTCCTTGCCATCCTCAGTGGAAATTCATGTGACAATAAACAAAAGCATAGACAGTATGATTTTCAGGATCAATCTCCATACCCCATTCCAGAGCTTACTTCATATGGGCGTCTTGAGGTTAATGTTTTGATCAAACCAACTGCTGATGAACTTCATCGAGTTTATGAAGCATTGGAGCCAAAGTTTGTTTACCTGCAAGGCGAGCAGCTAGAAGATAATGAACAAATTGGGTCCCTACTATGGGAAGATGTTGATCTGTCTTGCCCAGAAGCCTTATGTGGTTTATTTTCTTCCAAATTACCCAATACTGTTTATTTGGAAACTCCTAAAGGAGAAAATTTGGCAGAGGCTCTCCATTCTAAGGGAATTCCTTACACTATATATTGGAAAAGCGAATTTTCAAAGTATGCTGCATCACATTTTCGTCAAGCCTTTTTCTCAGTGGCACAAAGTACCTCCAGCCATACATGGGATGCTTTCCAGCTTGCTCTTGCATCTTTCAGATTATACTGTACAGAAAACAATGTCTCACCTTCAAACAGCATGAAGAGCAGAAGCAAGCTTGAGCCGCAGATGTTTGGTGACCCTCCTCACATTGATATTACTCCTTTTGAAGCAGACATGAGTGGGGAAGAAAACTCACCTGAGACTATTTCTGCTCTGAAGATTTATGATGATGATGTCAACATGAGAGTTCTTCTGTGTGGAGTTCCCTGCATGCTGGAGACTTGCTTATTGGGATCATTGGAGGACGGACTCAATGCTCTCCTGTGTACAGAAATACGTGGATGTAAACTTCACAACCGGACAAGTGCTCCACCACCTCCTCTTCAGGCAGGGACATTCTCACGTGGTGTGGTGACCATGCGTTGTGATATATCCACATGTAGTTCTGCTCATATATCACTCTTGGTGTCTGGTAGCGCAGATACATGCTTTAATGATCAGGCAAGGCTTTTGGAGAACTATATAAAAAAGGAGCTGATTGAGAAGAGTCAACTAGTTCAGGCATCACCTAATTGTGAACAAAGCAACTTACCTTCCTCCGAGCCTCGAAGGTCAGCCTCGATAGCTTCTGGGGCTAGTGTATTTGAAGTTTGCTTGCAGGTCCCTACATGGGCTTCACTGGTTCTGAGACAGCTTGCACCAGAAGTGTCGTACCGCAGCCTGGTTATGCTGGGAGTAGCCAGTGTTCAAGGATTGCCTGTTGCATCATTTAAAAAAGTTGATGCGGAACGTCTCCTTTACTTTTGTTCAAGGCAGTCAGAAAAAAATTGCCTTAATGACTCCATTTCTGTTGGGCATCCTAGTTGGCTGATACCTCCACCACCTACTCGAAAAAGAACAGAGCCTTTCTTTGGAATAAAGTCTTTCAATTCTTGTAGCCTTCAAGACAGTTATAGTGGTAACAATAGACAGAAATTGAACATTGCTGCAATGAGACCAATCCCTCAATCACATCGTCAGAAGATTCAACCTTTTTCTGGATTGTCTGAGGGGGAGAGGTTTGATGGAGAACGTGGAAAATCAAATCTGCCAATGGCTCCAACAAAGCATAATGGTATAGGCTCTAATCCAGTCACAAATAGGAAATCTTCGTCAACTTCCTTTCAGGCTCAGCAGATCGTCACATTAAATCCACTACCAATGAAGAAGCATGGTTGTGACAGAGCTCCAATACGGACCTGTTCAGAGGAGGAATTCTTGAGGGATGTAATGCAGTTTCTTATCCTTCGTGGGCATTCTCGGCTAATTCCACAGGGTGGTCTTTCTGAATTCCCTGAAGCCATTCTGAATGCTAAACGCCTAGATCTTTTTAACTTGTACAGAGAGGTGGTATCTAGAGGAGGGTTTCATGTTGGGAATGGCATCAATTGGAAAGGGCAAGTTTTCTCAAAGATGCGAAATCACACTTTGACTAATAGAATGACAGGTGTTGGCAATACACTTAAAAGACATTATGAAACTTATCTTCTAGAGTATGAACTGGCTCATGATGACGTAGACGGAGAGTGCTGCTTGTTGTGCCGCAGTAGCGCAGCTGGTGATTGGGTGAATTGTGGGATATGCGGTGAGTGGGCTCACTTTGGCTGTGATAGGCGTCAAGGACTTGGCGCATTTAAGGACTATGCTAAAACTGATGGGCTAGAGTACGTTTGCCCACATTGCAGCATCTCAAATTTCAGAAAGAAATCCCAGAAAACTTCAAACGGATATTAA 2259 0.4316 MMFNAQGPSKKSSLLAILSGNSCDNKQKHRQYDFQDQSPYPIPELTSYGRLEVNVLIKPTADELHRVYEALEPKFVYLQGEQLEDNEQIGSLLWEDVDLSCPEALCGLFSSKLPNTVYLETPKGENLAEALHSKGIPYTIYWKSEFSKYAASHFRQAFFSVAQSTSSHTWDAFQLALASFRLYCTENNVSPSNSMKSRSKLEPQMFGDPPHIDITPFEADMSGEENSPETISALKIYDDDVNMRVLLCGVPCMLETCLLGSLEDGLNALLCTEIRGCKLHNRTSAPPPPLQAGTFSRGVVTMRCDISTCSSAHISLLVSGSADTCFNDQARLLENYIKKELIEKSQLVQASPNCEQSNLPSSEPRRSASIASGASVFEVCLQVPTWASLVLRQLAPEVSYRSLVMLGVASVQGLPVASFKKVDAERLLYFCSRQSEKNCLNDSISVGHPSWLIPPPPTRKRTEPFFGIKSFNSCSLQDSYSGNNRQKLNIAAMRPIPQSHRQKIQPFSGLSEGERFDGERGKSNLPMAPTKHNGIGSNPVTNRKSSSTSFQAQQIVTLNPLPMKKHGCDRAPIRTCSEEEFLRDVMQFLILRGHSRLIPQGGLSEFPEAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCRSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISNFRKKSQKTSNGY 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0877 752 SMART ARID_2 572 675 - -
Prci4g0877 752 MobiDBLite consensus disorder prediction 510 545 - -
Prci4g0877 752 Pfam ARID/BRIGHT DNA binding domain 578 675 IPR001606 GO:0003677
Prci4g0877 752 CDD PHD_ARID4_like 685 736 - -
Prci4g0877 752 SUPERFAMILY ARID-like 575 689 IPR036431 GO:0003677
Prci4g0877 752 CDD ARID 577 675 - -
Prci4g0877 752 MobiDBLite consensus disorder prediction 530 545 - -
Prci4g0877 752 SUPERFAMILY FYVE/PHD zinc finger 671 739 IPR011011 -
Prci4g0877 752 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 752 IPR042293 -
Prci4g0877 752 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 681 737 IPR013083 -
Prci4g0877 752 Gene3D - 568 680 IPR036431 GO:0003677
Prci4g0877 752 ProSiteProfiles ARID domain profile. 575 679 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0877 Prci-Chr4 6432107 6441187 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0877 2 751 ARID Transcription Factor Family AT3G43240 64.106 0.0 956
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Prci4g0877 ARID 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0877 - - pcin:129299877 1202.58