Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci4g0851 | ATGGAAAAGAAGGTTAAGAAGAAGGAGGCTGTGAACAATGAAATCAAAGACGGCAATATTTTTGCCTCTTGCTCTTTCTCAAGCCTGGGACTTCATCCTACCTTATGCGACGAGCTCCGGGGAAGAATGGGCTTTGAAGTCCCAACCTCAATACAAGCCCAAGCCATTCCTTTTATTCTCTCAGGGCGTCATGTTCTCGTTAATGCTGCCACGGGCACCGGGAAGACTGTTGCATACTTGGCTCCAATTATTCATCATTTGCAGAATTATGATAATAGAATCCAACGGTCTGATGGAACATATGCGTTGGTTCTTGTACCAACGCGGGAGCTATGTTTGCAGGTTTATGAAGTTCTTCAAAAGTTATTGCATCGATTTCACTGGATTGTACCTGGGTACATAATGGGTGGTGAAAATAGATCAAAAGAAAAGGCCAGGTTGCGCAAAGGCATATCGATTCTTGTAGCAACTCCTGGGCGCCTTTTAGATCACTTGAAGAACACATCATCATTCTTGTACACAAATTTGCGCTGGATAATCTTTGATGAAGCTGATCGGATTTTGGAATTAGGATTTGGAAAGGAAATTAAGGAAATACTAGGTCATTTAGATACCAAAACAGGTGGTGCTAACCGAGAGAATGCATTTTCAAGGAACTCTGAAGCTCTGAGACAGAATTTGCTCTTATCAGCTACTTTAAATGAAAAAGTGAATCATCTTGCTAAAATTAGTCTAGAGAATCCTGTGATGATTGGTCTTGATGGCAAAAGGACAGAACCAAGTTCAACGATTGAGAGCTGTAGTTCTTCAGAATCTGATGAGGAGAGTGAAGACAATGAAGGGAAGTATCCCAGCAACATGCTGCTCACACCTGCTGATGATTATAACGTTCCCTCACAATTGATTCAGAGATATGTTAAAGTACCTTGCGGCACACGTCTTGCTGTTCTTCTTTCAATTTTGAAGTATCTTTCTGAAAGGGAAGCTTCACAAAAGATTGTGGTATTCTTTTCGACGTGCGATGCAGTGGACTTTCACTTTTCACTGTTAAGAGAATTCGAGTTTTCTTATCCACAATCAGAAGCAGATGCGAGACAGATGTTTCAGGGGAGCAAAGTGTTTCGTTTGCATGGGAACATGGATCAGGAGGACCGGAGGAAAACTTTTCAGTCGTTTAAAACAGGGAAATCAGCTCTGCTGTTTTCCACTGATGTAGCTGCTAGAGGGCTGGATTTTCCAAAAGTCAGATGCATTATACAATACGATTCTCCAGGGGAAGCCACTGAATATGTGCATAGGGTTGGTAGAACTGCTCGGCTGGGTGAAAGAGGAGAGTCATTGTTATTTCTGCAGCCAGTTGAAATAGATTATCTACGGGACTTGGAAAAACATGGTGTATCACTAACTGAGTATCCTCTCCTCAAAGTGTTAGATAGTTTCCCACCGTATGGGCAAAAGAAGCACACCAAGAATTTTGTTGTCATTGAGTCACATCCCTGGATCATTTGTCTCCAGAAGGCACTTGAATCCTTCGTCACGTCTAAGCCCAACATTGATAAACTTGCCAAGAGGGGATTTTGCTCTTGGGTCCGTGCCTACACAGCCCATCGTGGTGAGCTGAAAAAGTTGTTTATGATCAAGAAACTCCACTTGGGGCATGTAGCAAAAAGCTTTGCACTTGTACAACAACCTTCCTTAGTTGCAAAATCATACCAGAAGCAAGCCAAGAGGAAGAGGTTTCAGAGGCAAAGCGGGCTAGCTAAAAAGAGAAAGATGACCGGTGTGACATAA | 1791 | 0.4255 | MEKKVKKKEAVNNEIKDGNIFASCSFSSLGLHPTLCDELRGRMGFEVPTSIQAQAIPFILSGRHVLVNAATGTGKTVAYLAPIIHHLQNYDNRIQRSDGTYALVLVPTRELCLQVYEVLQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILVATPGRLLDHLKNTSSFLYTNLRWIIFDEADRILELGFGKEIKEILGHLDTKTGGANRENAFSRNSEALRQNLLLSATLNEKVNHLAKISLENPVMIGLDGKRTEPSSTIESCSSSESDEESEDNEGKYPSNMLLTPADDYNVPSQLIQRYVKVPCGTRLAVLLSILKYLSEREASQKIVVFFSTCDAVDFHFSLLREFEFSYPQSEADARQMFQGSKVFRLHGNMDQEDRRKTFQSFKTGKSALLFSTDVAARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLRDLEKHGVSLTEYPLLKVLDSFPPYGQKKHTKNFVVIESHPWIICLQKALESFVTSKPNIDKLAKRGFCSWVRAYTAHRGELKKLFMIKKLHLGHVAKSFALVQQPSLVAKSYQKQAKRKRFQRQSGLAKKRKMTGVT | 596 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci4g0851 | 596 | SMART | DUF4217_3 | 503 | 568 | IPR025313 | - | |
| Prci4g0851 | 596 | CDD | DEADc_DDX31 | 35 | 252 | - | - | |
| Prci4g0851 | 596 | SMART | ultradead3 | 44 | 265 | IPR014001 | - | |
| Prci4g0851 | 596 | CDD | SF2_C_DEAD | 301 | 450 | - | - | |
| Prci4g0851 | 596 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 316 | 488 | IPR001650 | - | |
| Prci4g0851 | 596 | MobiDBLite | consensus disorder prediction | 254 | 286 | - | - | |
| Prci4g0851 | 596 | Pfam | Helicase conserved C-terminal domain | 319 | 441 | IPR001650 | - | |
| Prci4g0851 | 596 | Gene3D | - | 1 | 254 | IPR027417 | - | |
| Prci4g0851 | 596 | PANTHER | RNA HELICASE | 22 | 520 | - | - | |
| Prci4g0851 | 596 | Pfam | Domain of unknown function (DUF4217) | 505 | 565 | IPR025313 | - | |
| Prci4g0851 | 596 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 21 | 251 | IPR027417 | - | |
| Prci4g0851 | 596 | Gene3D | - | 311 | 590 | IPR027417 | - | |
| Prci4g0851 | 596 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 62 | 471 | IPR027417 | - | |
| Prci4g0851 | 596 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 180 | 188 | IPR000629 | - | |
| Prci4g0851 | 596 | SMART | helicmild6 | 344 | 441 | IPR001650 | - | |
| Prci4g0851 | 596 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 24 | 53 | IPR014014 | GO:0003724 | |
| Prci4g0851 | 596 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 56 | 251 | IPR014001 | - | |
| Prci4g0851 | 596 | Pfam | DEAD/DEAH box helicase | 49 | 239 | IPR011545 | GO:0003676|GO:0005524 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci4g0851 | Prci-Chr4 | 6171224 | 6183138 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci4g0851 | 14 | 473 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 27.802 | 3.55e-38 | 144 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci4g0851 | K14806 | - | gmx:100805157 | 860.522 |