Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0850 ATGGCTTCTCTGTTTTTCAACAAATCAAATGTGATGATTCTGACCATTGTGGTTGAAGCGTTAGTTGATGAATGGAGTAACATCACGTCTGTTTTGGTAACAGGGGAAAGAAAGACAATTAACTCGGAGTTATGGCATGCATGTGCTGGACCCTTGGTTTCCTTACCTCCTGTTGGAAGCCTTGTCATTTATTTCCCTCAAGGACACAGTGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCTGATTTCATACCCAGTTATCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCACTGCATGTATGTGGACTGGGTTTTCACTGTTTGCAATGTTGAAACCTTTATGACAAGGAAGCAATACTGGCATCAGACATGGGTCTGAAGCAAAGCCGGCAGCCTGCTGAATTCTTCTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGCTCGTAGAGCTGCAGAGAAAATATTTCCACCTCTGGTGTGATTTTCAATGCAACCTCCTGCTCAGGAGATTGTTGCCAAGGATTTGCATGACAATACATGGACATTCAGACATATCTATCGGGGACAACCAAAGAGACATCTGCTGACTACTGGTTGGAGTGTCTTTGTCAGCACAAAAAGACTATTTGCTGGAGATTCTGTCCTTTTTTTTATAGATGGAAAACAGCAGCTTCTTGTTGGTACAAGGCGTGCTAATAGACAGCAGCCTGCTCTCTCTTCATCAGTAATATCCAGTGACAGCATGCATATAGGCATTCTTGCTGCTGCTGCGCATGCTGCCGCAAATAACAGCCCATTTACCATATTTTACAACCCAAGAGCTAGCCCTGCTGAATTTGTTATTCCATTGGCCAAGTATAATAAAGCTATGTATACCCAAGTTTCCCTTGGAATGATTAGAATGATGTTTGAGACTGAGGAGTCGGGAGTCCGTCGATACATGGGTACAATCACAGGGATCAGTGACTTGGATCCAGTGCGGTGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCGAGCAGAGTTTCAATTTGGGACATTGAACCTGTAGTAACCCCTTTCTACATTTGCCCGCCTCCTTTCTTCAGGCCCAGGTTCTCCAAGCAACCAGGAGTGCCAGATGATGAGTTTGACATGGAAAATGCATTCAAGAGAGCTATGCCCTGGCTTGGAGATGAGTTTGGAATGAAAGATGCCTCAAGTTCAATGTTTCCTGGCTTGAGTTTAGTTCAGTGGATGAGCATGCAGCAGAATAACCAGATTTCTGCTACGCAATCGGGAATGTTCCCATCTTTGCTCTCATCTAACTCCCTTAATAATAACGTCAGCACTGATGATCCATCGAAGTTACTGAGTTTTCAAAACCCTGTCCTCTCTGCATCAAATCTTCAATTTAACAGACCAAATTTACCAAACCAAGTCAACCAACAAGCCCCCACATCATGGCCTCAGCAGCAGCAGCAGCAGATGCAATCTTTGTTGCAAGCGCCTGTAAACCAGCTCCAGCAGCAGAGGCAGCAGGCACCGGTCCAGCCCCAGCCACAGCAGCTTCCTGAGCCACAGAACCTCACACAGCAGCAGCAGCCACTGCCCCAATTGCAGCAACAGCGAGTACAACAACCACAACAGCAGCAACAACAGTCATGCCAACAGGCCATTATACACAACGGGGTAATTGGTTCTAGCCAGATTCCAAATCAGAATGTGCCACAACCAATAGCCTACTCTCAGCTTCAGCAGCAGCAGCAGCAGTTACTCTCAGCCAGCATGCCACTTCAGCAAAATATTCAATCGGCTAGCAAGAATACATTCCCACTTACAACCTTGCCACAAGATTCACAGTTTCAGTCACAGCTAGACCAGCAAGCTACTCTCTTGCAGAGGCAGCAGCAGCAATCCCAATTGCAGTTATTGCAACAAAGCTTGTCCCAGAGGGCCCCGCAACAACCACAAGTGGCTCAATTACCACAACAAAACCTGTCAGAACAACAGTTGCAGTTACAGTTTCTACAAAAATTGCAGCAGCAGCAGCAGCAATTTCTTTCTCCGACTAGTTCAATTTTGCAGCCTCAGCTGCTACAGCAGCAGCAGCAAGCACACCTACAAAATCAGCAACTACCACAACCGCCTCTATCTCAGCATCAGCCTCAGCCTCAGCAGCTCAGCAACAATGCTTTATCTGCAGAGAAGCTTCTGGTCAGCAACAGCTTTTCTTCTTCACCTCTGATACAACCACAACAGCTTCCTTTGAACCAAGCTCATAATACAGCGAAACCACTTACAACTACCAGAGCTCCCTCTAGTCTTACAGATGGAGATGCCCCTTCATGCTCCACCTCGCCATCAACTAATAACTGCCAGTCAGCAAACCTCCTGAAGAGAAATCAACAAGTGCCGGCAACACTAGGGGGGAGCTTGGTAGTTGAGCCCACTAATAATCTGGTACATGAGCTGCAGGGCAAGTCTGACATCCAGATCAAACATGAGTTGCCAAGTGTAAAAGGGCCTGACCCGCTTAAGTATAAAGGGACAATAACTGATCAATTGGAAGCCTCTTCTTCTGGAACTTCTTACTGCCTTGATCCTTGCAGTGTGCAGCCAAACTTCCCCCTTCCAAATTTCTGCATGGATGGGGATGTCCAATCGCATCCTAGGAATAGTCTTCCATTTTCCTCTAATCTTGATGGATTAACACCCGATACCTTGCTCTCGAGAGGGTATGACTCACAAAAAGATCTTCAAAATTTGCTCTCTAACTATGGTGGTGCTCCAAGAGATATAGAAACTGAGCTGTCAACTGCTGCTATCAGCTCACAGTCATTTGGAGTGCCAAACATGCCCTTTAAGCCTGGCTGTTCAAGTGATGTTGCCATTAATGAAACTGGGGTTTTAAATAATGGCTTATGGACTAACCAGGCTCAACGAATGCGAACATATACTAAGGTTCAAAAACGTGGCTCTGTTGGAAGATGCATTGATGTCACTCGTTACAAGGGATATGATGAACTCAGACATGACTTGGCTCGTATGTTTGGGATTGAGGGGCAACTGGAAGATCCTCAAAGGACTGATTGGAAGCTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGGGATGACCCTTGGGAAGAATTTGTAGGCTGTGTTCAGAGCATTAAGATATTGTCATCTGCTGAAGTGCAGCAAATGAGCTTAGACGGGGATTTAGGTAATGTTCCGATATCCAACCAAGCTTGTAGTGGGACAGATAGTGGTAATGCATGGAGGGGACAATATGATGATAACTCAGCCGCCTCATTTAATCGATAA 3378 0.4565 MASLFFNKSNVMILTIVVEALVDEWSNITSVLVTGERKTINSELWHACAGPLVSLPPVGSLVIYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHVCGLGFHCLQCXNLYDKEAILASDMGLKQSRQPAEFFCKTLTASDTSTHGGFSVXRRAAEKIFPPLVXFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFFIDGKQQLLVGTRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPAEFVIPLAKYNKAMYTQVSLGMRXRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPRFSKQPGVPDDEFDMENAFKRAMPWLGDEFGMKDASSSMFPGLSLVQWMSMQQNNQISATQSGMFPSLLSSNSLNNNVSTDDPSKLLSFQNPVLSASNLQFNRPNLPNQVNQQAPTSWPQQQQQQMQSLLQAPVNQLQQQRQQAPVQPQPQQLPEPQNLTQQQQPLPQLQQQRVQQPQQQQQQSCQQAIIHNGVIGSSQIPNQNVPQPIAYSQLQQQQQQLLSASMPLQQNIQSASKNTFPLTTLPQDSQFQSQLDQQATLLQRQQQQSQLQLLQQSLSQRAPQQPQVAQLPQQNLSEQQLQLQFLQKLQQQQQQFLSPTSSILQPQLLQQQQQAHLQNQQLPQPPLSQHQPQPQQLSNNALSAEKLLVSNSFSSSPLIQPQQLPLNQAHNTAKPLTTTRAPSSLTDGDAPSCSTSPSTNNCQSANLLKRNQQVPATLGGSLVVEPTNNLVHELQGKSDIQIKHELPSVKGPDPLKYKGTITDQLEASSSGTSYCLDPCSVQPNFPLPNFCMDGDVQSHPRNSLPFSSNLDGLTPDTLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTAAISSQSFGVPNMPFKPGCSSDVAINETGVLNNGLWTNQAQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVGCVQSIKILSSAEVQQMSLDGDLGNVPISNQACSGTDSGNAWRGQYDDNSAASFNR 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0850 1127 Pfam Auxin response factor 268 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Prci4g0850 1127 MobiDBLite consensus disorder prediction 450 564 - -
Prci4g0850 1127 Gene3D - 995 1089 - -
Prci4g0850 1127 CDD B3_DNA 140 233 IPR003340 GO:0003677
Prci4g0850 1127 ProSiteProfiles PB1 domain profile. 1000 1093 IPR000270 GO:0005515
Prci4g0850 1127 SUPERFAMILY CAD & PB1 domains 1013 1078 - -
Prci4g0850 1127 Gene3D - 139 243 IPR015300 -
Prci4g0850 1127 Pfam B3 DNA binding domain 141 243 IPR003340 GO:0003677
Prci4g0850 1127 MobiDBLite consensus disorder prediction 1108 1127 - -
Prci4g0850 1127 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 36 617 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci4g0850 1127 ProSiteProfiles B3 DNA-binding domain profile. 141 244 IPR003340 GO:0003677
Prci4g0850 1127 MobiDBLite consensus disorder prediction 765 807 - -
Prci4g0850 1127 Gene3D - 305 376 - -
Prci4g0850 1127 Pfam AUX/IAA family 997 1086 IPR033389 -
Prci4g0850 1127 FunFam Auxin response factor 139 244 - -
Prci4g0850 1127 MobiDBLite consensus disorder prediction 721 750 - -
Prci4g0850 1127 SUPERFAMILY DNA-binding pseudobarrel domain 131 271 IPR015300 -
Prci4g0850 1127 SMART B3_2 141 244 IPR003340 GO:0003677
Prci4g0850 1127 FunFam Auxin response factor 995 1089 - -
Prci4g0850 1127 FunFam Auxin response factor 305 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0850 Prci-Chr4 6131062 6138630 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0850 35 500 B3 DNA Binding Superfamily AT1G19220 79.193 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci4g0850 AUX_IAA 3.5e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0850 K14486 - gmx:100815277 1469.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g0850 4 6131062 6138630 Prci4g0850 4 6131062 6138630 ECH