Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0848 ATGGTGAAGCAGGTCGCCGACAAGCCCTCTGAACAAAGCGATTCTAAGTTCAGAGGGGTTCGAAAGAGGAAGTGGGGCAAGTATGTCTCCGAAATTAGACTACCTAACAGCAGGGAGAGGATCTGGTTGGGATCTTACGACTCCGCTGAGAAGGCGGCGCGTGCTTTCGACGCCGCCATGTTTTGCTTACGCGGTCGCTCTGGTAACTTTAATTTCCCTGATAACCTGCCGGACATCGCAGGCGGCAGGTCCATGTCCCCCGCCCAGATTCAAGCCGCCGCGGCCCGTTTTGCCAATTCGGAGCTTATGACGGGTCATTCCAATAATCCCCTGACCCGTGAATTGCCAGAGGAGTCTCCGTCTCATTCGCTTTCGGAAGCGACTATGTTGCCCGTGGAATCCTCGTCACCCTCGCTTTCTGAGGTGACGGTGCAAACGGACTGTGAAATGACACAAAACGAATCGGTCCCGGATCTGTTCAAGACAATCGGATCGGGTAATTATGCAAATGAATACGGGATATTCGCGGGGTTTGATGACTTAACCAGCGAGTTCTACGTACCAGAAATGCCAACTGTGGATTACGAAGAAGAAAACATGGACGGACTGATAATTGACGACTCATTCCTGTGGAATTTTTAA 642 0.514 MVKQVADKPSEQSDSKFRGVRKRKWGKYVSEIRLPNSRERIWLGSYDSAEKAARAFDAAMFCLRGRSGNFNFPDNLPDIAGGRSMSPAQIQAAAARFANSELMTGHSNNPLTRELPEESPSHSLSEATMLPVESSSPSLSEVTVQTDCEMTQNESVPDLFKTIGSGNYANEYGIFAGFDDLTSEFYVPEMPTVDYEEENMDGLIIDDSFLWNF 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0848 213 Gene3D AP2/ERF domain 15 74 IPR036955 GO:0003700|GO:0006355
Prci4g0848 213 MobiDBLite consensus disorder prediction 1 21 - -
Prci4g0848 213 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Prci4g0848 213 MobiDBLite consensus disorder prediction 105 126 - -
Prci4g0848 213 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Prci4g0848 213 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Prci4g0848 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 147 - -
Prci4g0848 213 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Prci4g0848 213 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Prci4g0848 213 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Prci4g0848 213 SUPERFAMILY DNA-binding domain 15 75 IPR016177 GO:0003677
Prci4g0848 213 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0848 Prci-Chr4 6106725 6107799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0848 15 213 AP2-EREBP Transcription Factor Family AT1G19210 48.077 8.97e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci4g0848 AP2 1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0848 - - cave:132166456 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g0848 4 6106725 6107799 Prci4g0848 4 6106725 6107799 ECH