Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0772 ATGGATTCGCTAGATGGTGGTAGCTACTGGGATTTCATCGATTACAGCTTGATCGACGATACACCGGCGCCCACCGATTTTCTTTGGTCCAATCAGAGTCAGAGCGTGAGCTCTGAAATTGACTTTTCAGGTGGTGCTATTGTTCCTCAAGAGAACGCCCGGAAGAGAGGACGCCCCAATTTATGTAGCAATCCAGGTACAAAAGCTTGTCGTGAGAAAATGCGGAGGGAGAAACTGAATGACAGATTTTGTGACTTGAACTCTGTTTTGGAGCCTGGGAGACCTGTGAGGACTGATAAATCAGCTATACTTGATGACACCATCAGAATCTTGAATCAACTAAAAAATGAAGCTCAGGAACTCAAAGAAACAAATGAGAAGTTGCTAGAGGAAATAAAATTGTTGAAGGCAGAGAAAAATGAACTTCGTGAAGAAAAACTTGTTCTGAAAGCTGATAAAGAAAGGGTTGAAACGCAGTTAAAAGCACTGCCCGTTTCACCTGCAGGATTTATTCCTCCACATGCTGCTGCTTATCAAACCGGGGTCAACAAAATGGCTGTTTTCCCAAGCTATGGTTATTACCCAATGTGGCAATATCTGCCTGTTTCTGCTCGAGATACATCGCAGGATCATGAACTCAGGCCTCCAGCTGCTTAG 657 0.4399 MDSLDGGSYWDFIDYSLIDDTPAPTDFLWSNQSQSVSSEIDFSGGAIVPQENARKRGRPNLCSNPGTKACREKMRREKLNDRFCDLNSVLEPGRPVRTDKSAILDDTIRILNQLKNEAQELKETNEKLLEEIKLLKAEKNELREEKLVLKADKERVETQLKALPVSPAGFIPPHAAAYQTGVNKMAVFPSYGYYPMWQYLPVSARDTSQDHELRPPAA 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0772 218 Coils Coil 104 159 - -
Prci4g0772 218 FunFam Transcription factor bHLH104 66 147 - -
Prci4g0772 218 SMART finulus 69 120 IPR011598 GO:0046983
Prci4g0772 218 Gene3D - 67 147 IPR036638 GO:0046983
Prci4g0772 218 PANTHER BHLH TRANSCRIPTION FACTOR 8 218 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Prci4g0772 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 141 IPR036638 GO:0046983
Prci4g0772 218 CDD bHLH_AtILR3_like 68 143 - -
Prci4g0772 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 114 IPR011598 GO:0046983
Prci4g0772 218 Pfam Helix-loop-helix DNA-binding domain 67 114 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0772 Prci-Chr4 5385293 5387816 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0772 43 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 65.574 5.55e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci4g0772 HLH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0772 - - gmx:100787583 304.293