LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci4g0730	ATGCTTCTTCAAGGAGGAACTGGCATACCCCATTTAAAATGGTTTGGAGTTGAGGGCGATTACAATGTCATGGTTATTGACCTTCTTGGTCCAAGTTTAGAAGACTTGTTTAACTATTGCAATAGAAAATTCTCTCTAAAAACAGTTCTGATGCTAGCAGATCAGCTTATAAATAGAGTTGAATACATGCATTCCCGAGGTTTTCTTCACCGAGATATAAAGCCTGATAACTTTTTAATGGGTTTAGGCCGCAAAGCAAACCAGGTGTACATAATTGATTATGGCCTTGCAAAAAAGTATCGGGATCTCCAAACACACAAGCACATACCATATAGGGAAAACAAGAATCTCACTGGAACTGCTCGGTATGCAAGTGTTAACACTCACCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGATATGTGCTCATGTACTTCTTGAGAGGAAGTCTCCCATGGCAAGGCTTGAAAGCTGGCACTAAAAAGCAGAAATATGACAAGATCAGTGAAAAGAAGATGCTTACTCCAATAGAGGTCCTTTGCAAGTCATATCCTTCAGAGTTTACATCTTACTTTCATTACTGCCGATCATTGCGGTTTGATGACAAACCTGATTATGCATACCTAAAGAGACTCTTTCGGGACCTGTTTATTAGAGAAGGTTATCAGTTTGATTATGTATTTGATTGGACTATACTAAAATATCCACAAATTGGATCAAGTTCCAGATCACGGCAGCCAAGTGGGAAACAAGTTATGAACCAGGGACCATCTGCAGAGAGGGTAGAAAGGCCTTTAGTTGCACAAGAGACTCGGGAACGACTCCCAGGCTCTGTTGAAGCATTTGCTAGAAGAAGTGGCTCTGGTCTGCTTAGTGATCATTCCAGGCACAGGTCTTCAGACGGTGTGCCCTCATCCAAAATAGTGCACCCTGATTCTGAGAGGGCTCGAAGCTCTTCTCGCACTGGTAGTGCCTCAAAAAGGCCTGTCGTGTCAAGCAGTAGGCCAAGCTCCTCTGGTGAGCCTAGTGAAAGCCGTGCTAGCAGATTAGTGTCGAGCAGTGGCCGTCTATCGACCACTCAAAGGATTCAGCCTGGTTTTGAGTCCAAATCATCATCATTTACCCGTGCTACAGCATCAAGAGGTGGCCGTGATGATGCAATAAGGAGCTTTGAGCTTTTGTCAATTGGCACAGGGAAAAGGAAGTGA	1221	0.4341	MLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRSRQPSGKQVMNQGPSAERVERPLVAQETRERLPGSVEAFARRSGSGLLSDHSRHRSSDGVPSSKIVHPDSERARSSSRTGSASKRPVVSSSRPSSSGEPSESRASRLVSSSGRLSTTQRIQPGFESKSSSFTRATASRGGRDDAIRSFELLSIGTGKRK	406

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci4g0730	406	Gene3D	Transferase(Phosphotransferase) domain 1	3	280	-	-
	Prci4g0730	406	SMART	serkin_6	1	378	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci4g0730	406	MobiDBLite	consensus disorder prediction	322	383	-	-
	Prci4g0730	406	MobiDBLite	consensus disorder prediction	243	390	-	-
	Prci4g0730	406	SUPERFAMILY	Protein kinase-like (PK-like)	3	234	IPR011009	-
	Prci4g0730	406	ProSiteProfiles	Protein kinase domain profile.	1	222	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci4g0730	406	FunFam	CK1 family protein kinase	1	268	-	-
	Prci4g0730	406	MobiDBLite	consensus disorder prediction	294	321	-	-
	Prci4g0730	406	PANTHER	CASEIN KINASE-RELATED	12	316	-	-
	Prci4g0730	406	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	68	80	IPR008271	GO:0004672\|GO:0006468
	Prci4g0730	406	MobiDBLite	consensus disorder prediction	243	259	-	-
	Prci4g0730	406	Pfam	Protein kinase domain	20	172	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci4g0730	Prci-Chr4	4897037	4903084	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci4g0730	35	225	MAP Kinase Kinase Kinase	AT1G62400	27.919	1.34e-11	63.9

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1	Prci4g0730		Pkinase	4e-18	CL0016