Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0682 ATGGATTCGGATCAAGGGAAGCTTTTTATTGGTGGGATATCGTGGGATACGACGGAGGACAAGCTGAAAGATCATTTCAGCAACTACGGTGATGTCTTGCACACTTCCGTTATGAGAGAGAAGAACACTGGGAAGCCCAGAGGCTTTGGGTTTGTTGTGTTCGCAGATCCTTCGATTCTCGATAGGGTTCTCGAGGAAGAGCACAAAATCGATGGCAGAACGGTGGATGCTAAGAAGGCCTTCTCCAGAGAGGATCAACAAATTTCTGCCACTTCCAGGGCAGGAAATCCCAACTCTTATAGAAATTCAGGAAATGGTGGAAATATCAGGACCAAAAAAATATTTGTTGGAGGGTTGCCTCCTACATTGACTGAAGAAAAGTTCCGTCAGTATTTTGAGGGTTATGGTCATGTTACTGATGTAGTGGTCATGTATGACCAGAATACTGGACGGCCACGTGGATTTGGGTTTATTTCATTTGACTCTGAAGATGCAGTTGACAGGGTTTTGCATAAACCATTTCATGATTTAAATGGTAAGCAAGTAGAAGTGAAGCGTGCACTTCCAAAGGATGCTAATCCTGGTGCTAGTGGCCGTACTATGGGTGGTGTAGGAGGAGGTGGCGGCGGCTATCAGGGGTATGGGGCATCTGGTGGCAACCAAAATGCATATGATGGTCGGATGGATTCTGGTAGGTATGTGCAGCCTCCAAGCACTGGAGGTGGATTTCCACCTTATGGGTCTTCAGGATATAGTGCTCCTGGGTACAGTTATGGTCCTGCTAATAATGGCATTGGTTATGGCGGATATGGAAGTTATGGTGGTGCAAGCACTGGGTATGGGGGACCTGCTGGTGCAACTTATGGGAATCCCAACATCCCTAACGCTGCTTATGCTGGTGGTCCACCCGGTGCCCCAAGGAGTTCATGGCCTGCTCAAGCTCCCTCTGGTTATGGTTCTATGGGCTATGGGAATGCTGCTGCTTGGGGTGCTCCAGGTGGTGGTGCTGGATCTGGTGGTGGCGGTCCTGGTGCAGCCCCTGCAAGTCAATCACCCAGTGGGGCTGCTGGTTATGGGAATCAAGGGTATGGTTATGGTGGTTATGGTGGGTATGGTGGAAGTGATAGTTCTTATGGGAACCCTGGCGTATATGGTGCTGTTGGTGGGCGTTCTGGGAGTGCCCCAAATAGCTATGCCAGTGGTCCAGGAGGAAATGAACCACAAGGAAGTGGTGGCAACTACAATGGAAGTGGCTATGGTGATGCAAATGGAAGTTCAGGATATGGAAATGCTGCATGGAGATCTGAACCTGCGCAGCCATCTGGAAATTATGGGACTCCTCAGGTAAATGGTCCCCATGGTGGGCAAGTTGGTTATGGCAGCAGCTATGGCAGTGCACAATCACGGCAGGCCCAACAGCAGTAA 1425 0.4954 MDSDQGKLFIGGISWDTTEDKLKDHFSNYGDVLHTSVMREKNTGKPRGFGFVVFADPSILDRVLEEEHKIDGRTVDAKKAFSREDQQISATSRAGNPNSYRNSGNGGNIRTKKIFVGGLPPTLTEEKFRQYFEGYGHVTDVVVMYDQNTGRPRGFGFISFDSEDAVDRVLHKPFHDLNGKQVEVKRALPKDANPGASGRTMGGVGGGGGGYQGYGASGGNQNAYDGRMDSGRYVQPPSTGGGFPPYGSSGYSAPGYSYGPANNGIGYGGYGSYGGASTGYGGPAGATYGNPNIPNAAYAGGPPGAPRSSWPAQAPSGYGSMGYGNAAAWGAPGGGAGSGGGGPGAAPASQSPSGAAGYGNQGYGYGGYGGYGGSDSSYGNPGVYGAVGGRSGSAPNSYASGPGGNEPQGSGGNYNGSGYGDANGSSGYGNAAWRSEPAQPSGNYGTPQVNGPHGGQVGYGSSYGSAQSRQAQQQ 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0682 474 CDD RRM2_Hrp1p 113 190 - -
Prci4g0682 474 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 474 - -
Prci4g0682 474 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Prci4g0682 474 MobiDBLite consensus disorder prediction 75 107 - -
Prci4g0682 474 MobiDBLite consensus disorder prediction 335 354 - -
Prci4g0682 474 MobiDBLite consensus disorder prediction 84 107 - -
Prci4g0682 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Prci4g0682 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Prci4g0682 474 SUPERFAMILY RNA-binding domain, RBD 111 219 IPR035979 GO:0003676
Prci4g0682 474 MobiDBLite consensus disorder prediction 393 450 - -
Prci4g0682 474 MobiDBLite consensus disorder prediction 379 474 - -
Prci4g0682 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Prci4g0682 474 MobiDBLite consensus disorder prediction 460 474 - -
Prci4g0682 474 SMART rrm1_1 7 78 IPR000504 GO:0003723
Prci4g0682 474 SMART rrm1_1 113 185 IPR000504 GO:0003723
Prci4g0682 474 Gene3D - 4 88 IPR012677 -
Prci4g0682 474 FunFam heterogeneous nuclear ribonucleoprotein 1 107 227 - -
Prci4g0682 474 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Prci4g0682 474 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Prci4g0682 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Prci4g0682 474 Gene3D - 99 230 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0682 Prci-Chr4 4638568 4641442 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0682 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 24.038 2.45e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0682 K14411 - gmx:100811267 535.028