Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0660 ATGGCAGCTTCTGCAGCTGCGGCTATAGGCTCCTCATTCTCTTCCTCCATCAACACTCTCAAGTGCTTTCGTTCATCCAAGAACTTGTCCTGTGAACCCCTTCTCAGAATTTCATCAAACCGCGTGTTGGCGTCTGTGTCACAATCGCACTTGGTGGAACCACTTTCCTTTGATAGCAATTTCAACAAATTGTGGGTGCCTAGGGTATCTGCACAGGAAGAGCTTGTAGTGGCCGATGAGATTGATGCTGGTCTAGCTGAAGAGAATGAGGAGGGCGAAAAGGAAGTGGTAGAAGAAGGAGAGGCGGAAGTCTCTGTCAACACTAAGCTTTATTTTGGGAACTTGCCTTACAGTGTCGATAGCGCACAACTTGCAGCGATAATTCAGGATTATGGCAGCCCAGAACTAATTGAGGTTCTTTACCACAGGGAAACTGGAAAAAGCAGAGGATTTGCGTTTGTCACAATGAGTAGTGTCGAAGATTGTTATACAGTCATAGAAAACCTTGATGGAACTGAATACTTGGGTCGAACCCTGCGAGTGAACTTCTCCGACAAACCTAAACCAAAAGAACCCCTGTACCCTGAAACTGAACATAAGCTTTTTGTTGGGAACCTGTCATGGTCTGTGACTTCTGAGAGTCTGACAAAAGCTTTTCAAGAATATGGAAATGTGGTTGGAGCTAGGGTCTTATATGATGGGGAAACGGGAAGATCTCGTGGTTATGGCTTTGTTTGCTACTCAACCAAATCAGAAATGGAAGCTGCCCTTACATCCTTGAATGGAGTGGAACTGGAAGGACGAGAAATGCGTGTAAGCTTGGCTGAAGGGAAACGATCACAAAGTCAATAG 852 0.4542 MAASAAAAIGSSFSSSINTLKCFRSSKNLSCEPLLRISSNRVLASVSQSHLVEPLSFDSNFNKLWVPRVSAQEELVVADEIDAGLAEENEEGEKEVVEEGEAEVSVNTKLYFGNLPYSVDSAQLAAIIQDYGSPELIEVLYHRETGKSRGFAFVTMSSVEDCYTVIENLDGTEYLGRTLRVNFSDKPKPKEPLYPETEHKLFVGNLSWSVTSESLTKAFQEYGNVVGARVLYDGETGRSRGYGFVCYSTKSEMEAALTSLNGVELEGREMRVSLAEGKRSQSQ 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0660 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Prci4g0660 283 SMART rrm1_1 200 273 IPR000504 GO:0003723
Prci4g0660 283 SMART rrm1_1 109 182 IPR000504 GO:0003723
Prci4g0660 283 Gene3D - 70 188 IPR012677 -
Prci4g0660 283 PANTHER OS02G0815200 PROTEIN 45 279 - -
Prci4g0660 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 180 IPR000504 GO:0003723
Prci4g0660 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 271 IPR000504 GO:0003723
Prci4g0660 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 277 IPR000504 GO:0003723
Prci4g0660 283 Gene3D - 189 283 IPR012677 -
Prci4g0660 283 SUPERFAMILY RNA-binding domain, RBD 194 280 IPR035979 GO:0003676
Prci4g0660 283 CDD RRM2_NsCP33_like 200 275 - -
Prci4g0660 283 SUPERFAMILY RNA-binding domain, RBD 107 190 IPR035979 GO:0003676
Prci4g0660 283 FunFam 28 kDa ribonucleoprotein, chloroplastic 190 281 - -
Prci4g0660 283 FunFam 31 kDa ribonucleoprotein, chloroplastic 71 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0660 Prci-Chr4 4526450 4529292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0660 108 278 Eukaryotic Initiation Factors Gene Family AT4G34110 29.570 2.02e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0660 - - cave:132178760 391.349