Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0574 ATGGAGGATGCTCGGAAATATGTCAATGTCTGCTTGCTGGTGCTAGTAATGTTGTTCATTGGAGCCACGGCCAGAGTACAGATCTCTGAGCCAAGGAATGTTGGAGCACAGAAAATGGAGAGCTTAACCAACACGTCAATGGCGGCCAGAGCCAAACAGGCTGAGGAATTGAATGACCGGGCTGTGGCTGCTGACCCGGAGGATGTTGCTTCCCATACAGTAATGACCATCCGGAACAGCACTGAAAGGAGAAAGTTGGGATTTTTCTCCTGTGGAACTGGTAATCCTATTGATGATTGTTGGCGTTGCGACCCCAACTGGCAACGCAACCGGAAGCGCCTCGCAGATTGCGGCATTGGATTTGGTAGGAACGCCATTGGTGGTCGTGACGGTCGCTTCTATGTAGTCACTGACTCAGGAGACGATGACCCGGTCAACCCAAAGCCCGGCACTCTGCGGCACGCCGTGATCCAAGACAGGCCGCTCTGGATTGTATTCAAGCGCGACATGGTGATTCAATTGAAGCAGGAGCTCATTGTGAACAGCTTCAAGACAATTGACGGGCGAGGAGCGAACGTCCACATTGCTAACGGAGGCTGCATCACCATCCAGTATGTTACAAATGTCATAATCCACGGTCTTCACATCCATGACTGCAAACCCACAGGCAATGCCATGGTAAGAAGCTCCCCAACCCACTACGGTTGGAGGACCATGGCGGACGGTGATGCCATTTCCATATTCGGGTCCAGTCACATCTGGGTCGACCACAATTCCCTCTCTCACTGCGCTGACGGCCTCGTAGACGCTGTCATGGGTTCTACCGCCATTACAATCTCCAACAACCACTTCACCCACCATAATGAGGTGATTCTGCTGGGCCACAGTGACTCTTACACGAGGGACAAGCAAATGCAAGTGACCATCGCTTACAACCATTTTGGAGAGGGACTCATCCAGAGGATGCCGAGGTGCAGGCACGGATATTTCCACGTAGTGAACAACGATTACACCCACTGGGAGATGTATGCGATCGGCGGGAGTGCAAACCCCACCATCAACAGCCAGGGAAATAGATACAATGCTCCGCTTAACCCCTTTGCCAAGGAGGTGACAAAGCGAGTGGAGACGGCAGCGAGCCAGTGGAAGGGTTGGAATTGGAGATCGGAGGGAGATCTGATGCTGAACGGTGCTTATTTCACCCCTTCCGGCGCCGGAGCTTCAGCCAGCTATGCCAGAGCCTCCAGCTTAGGAGCCAAGTCCTCCACCATGGTTGGCACCATGACTTCCAATGCTGGTGCACTCGGTTGCAAAAGAAGCCGTCAGTGCTAG 1332 0.5315 MEDARKYVNVCLLVLVMLFIGATARVQISEPRNVGAQKMESLTNTSMAARAKQAEELNDRAVAADPEDVASHTVMTIRNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPTHYGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNPFAKEVTKRVETAASQWKGWNWRSEGDLMLNGAYFTPSGAGASASYARASSLGAKSSTMVGTMTSNAGALGCKRSRQC 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0574 443 SUPERFAMILY Pectin lyase-like 75 437 IPR011050 -
Prci4g0574 443 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Prci4g0574 443 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Prci4g0574 443 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Prci4g0574 443 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Prci4g0574 443 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Prci4g0574 443 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Prci4g0574 443 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Prci4g0574 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Prci4g0574 443 SMART amb_all 169 366 IPR002022 -
Prci4g0574 443 PANTHER PECTATE LYASE 18-RELATED 59 441 IPR045032 GO:0030570
Prci4g0574 443 Pfam Pectate lyase 175 358 IPR002022 -
Prci4g0574 443 Gene3D - 94 436 IPR012334 -
Prci4g0574 443 FunFam Pectate lyase 94 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0574 Prci-Chr4 3958353 3963045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0574 27 443 Polysaccharide Lyase AT4G13710 78.673 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0574 K01728 - qsa:O6P43_003054 790.03