Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0554 ATGGACGATATGGAGATTGATCAAATTGTGGATGTTCCTGACACTCCTGATAGATTAACTACTAGGCGTGTAGGTAGAAAATATGTTGGAAATCCTGATGTCTGTGTGAATGAGAAGGGTGAGAGGGTTCCCCCTGTTGCTGAAAACAGTAATGGAAGATTGACTTTCTGTCTTTCAAATGATTCAAACAGTGGTGAAATGAATAAATGCATGGCTGCTTCCCCATCAAATAATTCCTATACTTCTCAAAATGATCCCATATTTAGGAGATCCCAAACTGACAAGTTTTTTAGTAAAGATTTCGCACACACTGAAAAGATGGAGAAAGGGAAAAATATATGTCTTAAATTTCCTTCTAAATCATCTTCCAATGGCTATGGAGGTGTTACTCTTTTTGATTTGACTGAAGAAAATGGACAGCCTCAAAAACCCAAACCATATTTCTCACATCATGGGTTGAAGGATAATGCAACTGAAACCAAGAAAGATGTGAAAGCTAGCATTAGGAACTCTTCTATAACTTGCATCCCTGATTCTTCAAATGCATCTAGCAATGCCTTACCAGGAAGGTGTAAAATAGATGATGAAACACTTCCATGCTCAAATATAACTGTTGATCGTGGAAAGAGTATTGTTCTATCTAGTGATTCTCAACAAAAAACTGGAAAGCAGGCAGCTTTGTCCCCTTGCCTTTTAACTGCACCTAGATTCAGAGGGCATAAGAGATTGGTGCGAAATGGCTGTATCTCACCTTATAATATTGCAGCAAGAGCAAAACAATCAGCTGAACAGAATGATGTTGAACAGAGCCGTGTGGTGGATGATGTTTCTAGCAATACAACGTCTCATGTGAGTATCAATGATATAGTTGCTGAAGATAGAAGCAGTAGCAGAGTGAAGGGAAAGGAATTATTTATCCATCCTTCAATTGTGCATAATGCCAGAACTATTGAAACTGCTAGCAGCGGCCCTATGGACGATCATGAAGAGACCAATTTTACCAGTAATGCTATTAGACATTCACATGGATGCTTTGGGGGATCAGGTGGCTGGACAGCAGCACGTAACCATAGAACTACTGGTTGGCCCTTGCATGATGTTACTGGGCATCGTTCAAGGAGAGGTGAAAATTCTGAAAGATTTATTAGTATGCATTGTAGGAACGGAGTGGGTAGAAGAGACATTGGGAGCAGTCAAAACGCTATGGATGTTAGGCATCCTCTAGAAAATAACGCAACTTCTCTGATCATTCCTGATGCTGAACAGTCAACTAGATCTTGTAATACAGCAGACAAACTGACTAAAAGGCAAAGGAAAAACGCATCAACTTCTAGAAATCTGAATTCAGAGATCATGATTCTTGATTCCCCTGGGGAATCATCAAATTTAAGCTCATCTCAAAGCTCTGAAGTTGTTGAGCTGTTACCTGGAGCAACATACACCAACAGAGTGTCCCATGATTCAGATGACATGAATCCTATTGACTCAGATACTCGGGCTAGACAGGTAGAAGCTGATGAGATATTGGCCCGTGAGCTTCAAGAACAACTATATCATGAGGATTCTGTTGATGGGGGAGAGCATATTGATGAACATTTAGCATGGGCATTGCAGCATGAGGAGGAACTTCTGCATACATCCTTTGAGGGTCACCATATATCACACCCTAGATTGTTATCAAGGGCAGCCTCAAATAGACAGCCTCGATCCCGTTCTCATCAAAGTCCTACAAATAGAAGGAGAGCTGTGCCCCATGCCCCTTCCTCCAATAGAGTATCACAGTTGAGGAGTCGCATTCTAAATCGGTCTTCAGTACCTGCCATCTCAACTAGAGGAAGACGCCTTCGGTTCCCTGTGGATATGGACTTTGACATGAGACTTGATATATTGGAAGCATTGGAAGATGCAGTTGGGGATATTAGTGACATGGGAATTGCTGAAGACATGTTTCAAGCTCATCGAGACTTCAATGAAGATGATTATGAAATGCTATTGGCCCTTGATGAGAACAATCACCAACATGCTGGTGCATCTGCCCATCAGATCAATAGTTTGCCGCAGTCCACTATACAGACTGACAACTTCCAAGAGGCATGTGCCATATGTCTTGAGATTCCAGTTATGGGAGAAACCATTCGCCATCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATTGATCCTTGGCTCCGTAGGAGGACCTCGTGCCCAGTGTGCAAGTCATCTATCACCTAA 2235 0.4166 MDDMEIDQIVDVPDTPDRLTTRRVGRKYVGNPDVCVNEKGERVPPVAENSNGRLTFCLSNDSNSGEMNKCMAASPSNNSYTSQNDPIFRRSQTDKFFSKDFAHTEKMEKGKNICLKFPSKSSSNGYGGVTLFDLTEENGQPQKPKPYFSHHGLKDNATETKKDVKASIRNSSITCIPDSSNASSNALPGRCKIDDETLPCSNITVDRGKSIVLSSDSQQKTGKQAALSPCLLTAPRFRGHKRLVRNGCISPYNIAARAKQSAEQNDVEQSRVVDDVSSNTTSHVSINDIVAEDRSSSRVKGKELFIHPSIVHNARTIETASSGPMDDHEETNFTSNAIRHSHGCFGGSGGWTAARNHRTTGWPLHDVTGHRSRRGENSERFISMHCRNGVGRRDIGSSQNAMDVRHPLENNATSLIIPDAEQSTRSCNTADKLTKRQRKNASTSRNLNSEIMILDSPGESSNLSSSQSSEVVELLPGATYTNRVSHDSDDMNPIDSDTRARQVEADEILARELQEQLYHEDSVDGGEHIDEHLAWALQHEEELLHTSFEGHHISHPRLLSRAASNRQPRSRSHQSPTNRRRAVPHAPSSNRVSQLRSRILNRSSVPAISTRGRRLRFPVDMDFDMRLDILEALEDAVGDISDMGIAEDMFQAHRDFNEDDYEMLLALDENNHQHAGASAHQINSLPQSTIQTDNFQEACAICLEIPVMGETIRHLPCLHKFHKDCIDPWLRRRTSCPVCKSSIT 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0554 744 PANTHER SI:CH211-59O9.10 374 744 - -
Prci4g0554 744 SUPERFAMILY RING/U-box 698 743 - -
Prci4g0554 744 FunFam RING/U-box superfamily protein 664 744 - -
Prci4g0554 744 MobiDBLite consensus disorder prediction 440 467 - -
Prci4g0554 744 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 665 744 IPR013083 -
Prci4g0554 744 MobiDBLite consensus disorder prediction 559 595 - -
Prci4g0554 744 Pfam Ring finger domain 698 740 IPR001841 -
Prci4g0554 744 CDD RING-H2_PA-TM-RING 699 740 - -
Prci4g0554 744 MobiDBLite consensus disorder prediction 579 595 - -
Prci4g0554 744 MobiDBLite consensus disorder prediction 429 467 - -
Prci4g0554 744 ProSiteProfiles Zinc finger RING-type profile. 699 740 IPR001841 -
Prci4g0554 744 SMART ring_2 699 739 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0554 Prci-Chr4 3892604 3898747 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0554 235 744 C3H Transcription Factor Family AT1G04790 37.984 9.91e-83 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0554 - - aprc:113872307 750.355