Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0553 ATGGTGTTCTGCAATGCGCACACATCCATCGGCGATTCCATTCAGCAAGAAAATATGGACGATATGGAGATTGATCAAATTGTGGATGTTCCTGACACTCCTGATAGATTAACTACTAGGCGTGTAGGTAGAAAATATGTTGGAAATCCTGATGTCTGTGTGAATGAGAAGGGTGAGAGGGTTCCCCCTGTTGCTGAAAACAGTAATGGAAGATTGACTTTCTGTCTTTCAAATGATTCAAACAGTGGTGAAATGAATAAATGCATGGCTGCTTCCCCATCAAATAATTCCTATACTTCTCAAAATGATCCCATATTTAGGAGATCCCAAACTGACAAGTTTTTTAGTAAAGATTTCGCACACACTGAAAAGATGGAGAAAGGGAAAAATATATGTCTTAAATTTCCTTCTAAATCATCTTCCAATGGCTATGGAGGTGTTACTCTTTTTGATTTGACTGAAGAAAATGGACAGCCTCAAAAACCCAAACCATATTTCTCACATCATGGGTTGAAGGATAATGCAACTGAAACCAAGAAAGATGTGAAAGCTAGCATTAGGAACTCTTCTATAACTTGCATCCCTGATTCTTCAAATGCATCTAGCAATGCCTTACCAGGAAGGTGTAAAATAGATGATGAAACACTTCCATGCTCAAATATAACTGTTGATCGTGGAAAGAGTATTGTTCTATCTAGTGATTCTCAACAAAAAACTGGAAAGCAGGCAGCTTTGTCCCCTTGCCTTTTAACTGCACCTAGATTCAGAGGGCATAAGAGATTGGTGCGAAATGGCTGTATCTCACCTTATAATATTGCAGCAAGAGCAAAACAATCAGCTGAACAGAATGATGTTGAACAGAGCCGTGTGGTGGATGATGTTTCTAGCAATACAACGTCTCATGTGAGTATCAATGATATAGTTGCTGAAGATAGAAGCAGTAGCAGAGTGAAGGGAAAGGAATTATTTATCCATCCTTCAATTGTGCATAATGCCAGAACTATTGAAACTGCTAGCAGCGGCCCTATGGACGATCATGAAGAGACCAATTTTACCAGTAATGCTATTAGACATTCACATGGATGCTTTGGGGGATCAGGTGGCTGGACAGCAGCACGTAACCATAGAACTACTGGTTGGCCCTTGCATGATGTTACTGGGCATCGTTCAAGGAGAGGTGAAAATTCTGAAAGATTTATTAGTATGCATTGTAGGAACGGAGTGGGTAGAAGAGACATTGGGAGCAGTCAAAACGCTATGGATGTTAGGCATCCTCTAGAAAATAACGCAACTTCTCTGATCATTCCTGATGCTGAACAGTCAACTAGATCTTGTAATACAGCAGACAAACTGACTAAAAGGCAAAGGAAAAACGCATCAACTTCTAGAAATCTGAATTCAGAGATCATGATTCTTGATTCCCCTGGGGAATCATCAAATTTAAGCTCATCTCAAAGCTCTGAAGTTGTTGAGCTGTTACCTGGAGCAACATACACCAACAGAGTGTCCCATGATTCAGATGACATGAATCCTATTGACTCAGATACTCGGGCTAGACAGGTAGAAGCTGATGAGATATTGGCCCGTGAGCTTCAAGAACAACTATATCATGAGGATTCTGTTGATGGGGGAGAGCATATTGATGAACATTTAGCATGGGCATTGCAGCATGAGGAGGAACTTCTGCATACATCCTTTGAGGGTCACCATATATCACACCCTAGATTGTTATCAAGGGCAGCCTCAAATAGACAGCCTCGATCCCGTTCTCATCAAAGTCCTACAAATAGAAGGAGAGCTGTGCCCCATGCCCCTTCCTCCAATAGAGTATCACAGTTGAGGAGTCGCATTCTAAATCGGTCTTCAGTACCTGCCATCTCAACTAGAGGAAGACGCCTTCGGTTCCCTGTGGATATGGACTTTGACATGAGACTTGATATATTGGAAGCATTGGAAGATGCAGTTGGGGATATTAGTGACATGGGAATTGCTGAAGACATGTTTCAAGCTCATCGAGACTTCAATGAAGATGATTATGAAATGCTATTGGCCCTTGATGAGAACAATCACCAACATGCTGGTGCATCTGCCCATCAGATCAATAGTTTGCCGCAGTCCACTATACAGACTGACAACTTCCAAGAGGCATGTGCCATATGTCTTGAGATTCCAGTTATGGGAGAAACCATTCGCCATCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATTGATCCTTGGCTCCGTAGGAGGACCTCGTGCCCAGTGTGCAAGTCATCTATCACCTAA 2289 0.4176 MVFCNAHTSIGDSIQQENMDDMEIDQIVDVPDTPDRLTTRRVGRKYVGNPDVCVNEKGERVPPVAENSNGRLTFCLSNDSNSGEMNKCMAASPSNNSYTSQNDPIFRRSQTDKFFSKDFAHTEKMEKGKNICLKFPSKSSSNGYGGVTLFDLTEENGQPQKPKPYFSHHGLKDNATETKKDVKASIRNSSITCIPDSSNASSNALPGRCKIDDETLPCSNITVDRGKSIVLSSDSQQKTGKQAALSPCLLTAPRFRGHKRLVRNGCISPYNIAARAKQSAEQNDVEQSRVVDDVSSNTTSHVSINDIVAEDRSSSRVKGKELFIHPSIVHNARTIETASSGPMDDHEETNFTSNAIRHSHGCFGGSGGWTAARNHRTTGWPLHDVTGHRSRRGENSERFISMHCRNGVGRRDIGSSQNAMDVRHPLENNATSLIIPDAEQSTRSCNTADKLTKRQRKNASTSRNLNSEIMILDSPGESSNLSSSQSSEVVELLPGATYTNRVSHDSDDMNPIDSDTRARQVEADEILARELQEQLYHEDSVDGGEHIDEHLAWALQHEEELLHTSFEGHHISHPRLLSRAASNRQPRSRSHQSPTNRRRAVPHAPSSNRVSQLRSRILNRSSVPAISTRGRRLRFPVDMDFDMRLDILEALEDAVGDISDMGIAEDMFQAHRDFNEDDYEMLLALDENNHQHAGASAHQINSLPQSTIQTDNFQEACAICLEIPVMGETIRHLPCLHKFHKDCIDPWLRRRTSCPVCKSSIT 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0553 762 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 683 762 IPR013083 -
Prci4g0553 762 PANTHER SI:CH211-59O9.10 392 762 - -
Prci4g0553 762 MobiDBLite consensus disorder prediction 447 488 - -
Prci4g0553 762 ProSiteProfiles Zinc finger RING-type profile. 717 758 IPR001841 -
Prci4g0553 762 FunFam RING/U-box superfamily protein 682 762 - -
Prci4g0553 762 SUPERFAMILY RING/U-box 716 761 - -
Prci4g0553 762 CDD RING-H2_PA-TM-RING 717 758 - -
Prci4g0553 762 MobiDBLite consensus disorder prediction 597 613 - -
Prci4g0553 762 Pfam Ring finger domain 716 758 IPR001841 -
Prci4g0553 762 SMART ring_2 717 757 IPR001841 -
Prci4g0553 762 MobiDBLite consensus disorder prediction 458 488 - -
Prci4g0553 762 MobiDBLite consensus disorder prediction 577 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0553 Prci-Chr4 3892567 3898747 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0553 19 762 C3H Transcription Factor Family AT1G04790 32.503 1.45e-82 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0553 - - aprc:113872307 754.207