Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0540 ATGCGTTTCGCACTCTTCCGAACTGAAACCTGTAAGTTTCTCGTCACCGTCGGCTGTCTTCCATCTCAAATTCAAATGGACATGGATATGGACATTCCTGTTCCAGAAGAACTGGAGTTGCTGGAATCCAATGCTCGTCTTCTCGAAGACTACCCAGACCTGGAGCCACCGGAACCCTACCCGTACGAAGACCAAGAAGCGCCACCAGCGGTTCAACCACCATCAACCCCACATCTTCAATTTGACTCTGAAATCCAAGTCATCAGCCACAAGCGATCAAGGTCGGTTAGTCCCAACGGATCACTTTCAGAAGCTGCGGAGCTGTCAGAGGAGAAAAGGTGCAGGACTGACGAGTCGGCACGAGCGACTAATGAGGATTGGCTTCGCTACTCGCCACCCAAGGGTAGCGAGTCTGTAGTGGGAGAACAAGCGAGCTTTGTGGAGGAGAAAATGTTATCCAGGTATGCGTCGGAAATCGATGGAGAGTGTATACCGGTCACTGCACCCAACGGCGACAGGGTTTATGCGAAGTTAGATAGGTTAGAAGGGGACCAGAGATCGAAGAAACTGAATGTGAGAGCAAATTCTGACGGTCTTATATTAGAACCCATTAATATTCTATTTGAAAAATTGGATCAAGAGGCTTTAACTAAGACATTGAAAGCTAGTTCTGAATGCCAAAATGTTCCGGATGTTCCTGAAAAACCAATCATCCACGAGCAACTTTGGGTTGATAAATACACTCCAAATTCATTCACTGAGCTTCTTAGTGATGAACATACAAATCGTGAGGTACTCCTGTGGTTGAAGCAATGGGATTCTAGTGTATTTGGATCTGATATTTGCAGCACGTCAGATGAAGTTCTGTCTGCCTTGAAACGACATTCTACTATTGTCCAAAATCAGAAACCCTTAGATTCAAAATTTCAAAGAATGAGTGGAGGCCCTAAATGGAGTAACAAGAGATATAGACATTCTAGAAGCATGGATGAAAGTGGTAATTCAAATAGCTTTCAGGGTATATTGAATAGGAAAGCAAAGCATACTGGTCCACCAGAACAGAAGATCCTTTTGCTTTGTGGTCCTCCGGGTCTTGGAAAAACTACACTTGCACATGTAGCTGCTAGTCATTGTGGATATCATGTGGTGGAGGTTAATGCTAGTGATGATCGTAGTACATCAACAATTGAATCTAAGATCCTTGATGTGGTTCAGATGAACTCTGTCATGTCTGATTCAAAACCGAAGTGCCTGGTGGTGGATGAAATTGATGGGGCTCTGTCCGATGGAAAGGGTGCTGTGGAGGTTCTTTTAAAGATGGTTTCTGTTGAAAAGAAGTCTGATGCGGGAAAGGAAAATTTGGCAAAAGAGCAATTGGGAAGGAGGTCCTCAAAGAAGGGACATAATAAAGCATCACTGTCAAGACCTGTAATTTGCATCTGCAATGACCTATATGCCCCTGCCCTGAGACCATTGCGTCAGGTAGCAAAGGTTCACATGTTTGTTCAACCAACAGTCAGTCGTGTGGTAAGCAGGCTCAAATACATATGTAACAAGGAGGGGATGAAAGCTAATGCCATTGCACTTACTGCCCTAGCAGAATATACAGAATGTGATATACGTTCATGCTTAAATACCCTCCAATTTCTCAGCAAGAAGAAAGAAACCCTCAATGTGTTTGATATTGGTTCTCAAGTGGTTGGCCGGAAAGACATGTCAAAGAATGTTCTAGACATTTGGAAGGAGGTTTTTCAAAGGAAAAAAATCAAGACAGAAAGAAAATATGACAATAGCATGCTTTTTGAAGTTAACTCCTTGTACTCCATTGTATCAAGCCGTGGTGATTATGACTTGATTCTTGATGGAATTCATGAAAACATTTTACATCTCAATTATCATGACCCAGTGATGCAGAAAACTGTCAAGTGCTTGAATAGTCTAGGAGTTTCTGATCTACTGCATCAATATATCATGCGTACACAACAAGTTCCCCTTCTGGTTTACTTGCCACCCATAGCAATTACAATACATCGACTAGTAGCTCAAATTCAGAAGCCAAACATTGAATGGCCAAGGTCCTACCAAAGGTATCGAGCAATGATGGCAGAAAAGATGGACATTTTGAATACTTGGCACTACAAAATTCCACCATATATTGCAAGGCACTTATCAGCTAGTTCCTTTGTGGAAGACTTAATTTCTCCATTATTACATATCCTGTCCCCTCCAACTATAAAACCGGTGGCATCACAACTGCTGTCTGATAAAGAGAAAAATGATCTTGCTCAATTGGTTAGCACAATGGTATCTTACTCTGTAACATATAAGAACATGAAATCAGATATGCTGCCTAATAGCCTGAGACATGAAGTAGCAGATCACTTAACATTATCATTTGATCCGCCAATCTGTGACTTCATCAATTTTAAGGATTATACCTCAAATCATTATGTGCTTGCTCTAGCTGTCAAGCAGATTCTTGTGCATGAGGTTGAAAAGCAAAAGATCTTGCAAGTTAATATTGATAGACCTTTAGGAAATGGTAGCAGCAGTGGAAGGCCTGAATTCATTGAGGCTGGAACTAGCAATGCCCAATCATCCAAAATCAATCACCCAGCTGCAGTTTCTGCTAAAAACATTCAAAACGAAAGTAATGTCACAAAAGCAAGGAAAAATAATGCAAATGCAACTATAGTTTCACAGAATTCGCATCCTGATAAAGGGGCAGCGGACAATATGAAAGCGCAAAACACAGGAAGGATGAGAAAGCCATCCAGTGGTTCCTTCTTTGACAGAGCAGGTTTAGAAAGTCGAATAATAAAGGTTTTCAAAGTGATGATAGAACTGAACAGAAAGAAGCAATCTTGGAGAAAGCTCTACACCCATTACTGTTCAAATTTAACGAGGGTTTCACCAACGCTGTCAAGAGGCCTGTTCGTATTCGTGAATTTCTAA 2955 0.4166 MRFALFRTETCKFLVTVGCLPSQIQMDMDMDIPVPEELELLESNARLLEDYPDLEPPEPYPYEDQEAPPAVQPPSTPHLQFDSEIQVISHKRSRSVSPNGSLSEAAELSEEKRCRTDESARATNEDWLRYSPPKGSESVVGEQASFVEEKMLSRYASEIDGECIPVTAPNGDRVYAKLDRLEGDQRSKKLNVRANSDGLILEPINILFEKLDQEALTKTLKASSECQNVPDVPEKPIIHEQLWVDKYTPNSFTELLSDEHTNREVLLWLKQWDSSVFGSDICSTSDEVLSALKRHSTIVQNQKPLDSKFQRMSGGPKWSNKRYRHSRSMDESGNSNSFQGILNRKAKHTGPPEQKILLLCGPPGLGKTTLAHVAASHCGYHVVEVNASDDRSTSTIESKILDVVQMNSVMSDSKPKCLVVDEIDGALSDGKGAVEVLLKMVSVEKKSDAGKENLAKEQLGRRSSKKGHNKASLSRPVICICNDLYAPALRPLRQVAKVHMFVQPTVSRVVSRLKYICNKEGMKANAIALTALAEYTECDIRSCLNTLQFLSKKKETLNVFDIGSQVVGRKDMSKNVLDIWKEVFQRKKIKTERKYDNSMLFEVNSLYSIVSSRGDYDLILDGIHENILHLNYHDPVMQKTVKCLNSLGVSDLLHQYIMRTQQVPLLVYLPPIAITIHRLVAQIQKPNIEWPRSYQRYRAMMAEKMDILNTWHYKIPPYIARHLSASSFVEDLISPLLHILSPPTIKPVASQLLSDKEKNDLAQLVSTMVSYSVTYKNMKSDMLPNSLRHEVADHLTLSFDPPICDFINFKDYTSNHYVLALAVKQILVHEVEKQKILQVNIDRPLGNGSSSGRPEFIEAGTSNAQSSKINHPAAVSAKNIQNESNVTKARKNNANATIVSQNSHPDKGAADNMKAQNTGRMRKPSSGSFFDRAGLESRIIKVFKVMIELNRKKQSWRKLYTHYCSNLTRVSPTLSRGLFVFVNF 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0540 984 FunFam Chromosome transmission fidelity protein 18 504 571 - -
Prci4g0540 984 Gene3D - 504 575 - -
Prci4g0540 984 Pfam ATPase family associated with various cellular activities (AAA) 357 482 IPR003959 GO:0005524|GO:0016887
Prci4g0540 984 CDD AAA 352 442 - -
Prci4g0540 984 MobiDBLite consensus disorder prediction 61 75 - -
Prci4g0540 984 MobiDBLite consensus disorder prediction 899 928 - -
Prci4g0540 984 CDD HLD_clamp_RFC 504 562 - -
Prci4g0540 984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 241 559 IPR027417 -
Prci4g0540 984 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 28 932 - -
Prci4g0540 984 MobiDBLite consensus disorder prediction 309 338 - -
Prci4g0540 984 MobiDBLite consensus disorder prediction 106 120 - -
Prci4g0540 984 MobiDBLite consensus disorder prediction 90 104 - -
Prci4g0540 984 Gene3D - 240 503 IPR027417 -
Prci4g0540 984 MobiDBLite consensus disorder prediction 50 78 - -
Prci4g0540 984 SMART AAA_5 353 507 IPR003593 GO:0016887
Prci4g0540 984 MobiDBLite consensus disorder prediction 90 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0540 Prci-Chr4 3793818 3807620 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0540 354 562 Core DNA Replication Machinery Family AT5G22010 29.911 2.67e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0540 K11269 - gmx:100785041 1171.76