Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0474 ATGTTGTCTAATCATTTTCAAAACGGCATCGAAACGGCGAAGCTTGTTTGGTCGCGGATTCCGAACTCGGAAGATTTGCAGTACCTCGATGATGCCGTTAGCCTCTTGAAGAAGAGCGATGGAAGCGGGGTTGAGAGTCTTGACTACGAAGTCATAGAGAATTGTGCTTACCGAGAAGAACAGGCGCAAAGAGGGAAGCTATACGTGAGCTACTTACTGGTGGTGAAATGGTTCTTTGCTTTGCTAATCGGCATCGGTACTGGACTTGCTGCTGTTTTCATTAATATTTCTGTTGAGAACTTTGCTGGCTGGAAGTACTCGTTGACATTTAATATAATTCAAAAATCATATGTGGCTGGTTTCATTGTATATGTCCTCATCAACTTGGTTTTGGTCTATTCCTCTGTATATATTGTCACACAATTTGCACCAGCGGCAGCTGGATCGGGTATTCCTGAAATCAAGGGTTACTTGAATGGAATTGATGTTCATGGCATCCTTCTTTTCAGAACCTTGATTGGAAAGATTTTTGGTAGCGTTGGTTCAGTGGGAGGTGGCCTTGCTTTGGGTAAAGAAGGTCCTCTTGTTCATATTGGTGCATGTATTGCTTCTTTACTTGGACAAGGTGGATCCACCAAATATCATCTAAGTTCAAGGTGGTTTCAAGTATTCAAAAGTGATCGAGACCGCCGTGATCTTGTAACCTGTGGGTGTGCAGCTGGAGTTGCAGCTGCATTTAGAGCTCCAGTTGGTGGTGTATTGTTTGCATTGGAAGAGGTTACATCTTGGTGGAGGAGTCAACTGATGTGGCGGGTCTTCTTCACATCTGCTATTGTGGCTGTTGTGGTGCGTACTGCAATGGGGTGGTGTAAGAATGAGAGGTGTGGACATTTTGGCTCAGGTGGATTCATAATATGGGATGTATCAGATGGTCAAGAGGATTATTCCTTTGTGGAGTTATTACCAATGGCTATTATTGGGGTTATTGGAGGTTTGCTAGGAGCCTTGTTTAACCAGCTTACTCTTTATATTACCTCTTGGCGCAGAAATTATCTGCACAAAAAGGGGATCCGTGTCAAGATTGTTGAAGCATGCCTTGTCTCAGTGTTAACATCAGTTATTTCATTTTGCTTACCGCTTCTCAGAAAATGTAGTCCTTGCCCTGAATCTGATCCTGATTGTCCTCGGCCTCCTGGAATGTATGGGAATTATGTCAATTTCTTTTGTGGCAAAGAAAAGGAATACAATGATCTTGCTACTATTTTCTTTAATACGCAGGATGATGCCATAAGGAACTTGTTCAGCGCAAAAACGATACATGAGTTCAGTGCCCAAAGCTTATTAACCTTTTTGGTTATGTTTTATACTTTAGCTGTGGTGACATTTGGTACTGCTGTTCCTGCTGGTCAGTTTGTTCCTGGAATCATGATAGGTTCAACATATGGGCGTCTAGTTGGCATGTTTGTTGTAAGATATTACAGAAAGCTCAACATTGAAGAGGGAACGTATGCTCTGCTGGGAGCTGCATCTTTTCTTGGAGGTTCAATGCGGATGACAGTGTCTCTATGTGTCATTATGGTTGAAATCACAAATAACTTAAAACTTTTACCCCTTATCATGCTTGTTCTTCTTATATCAAAGGCTGTTGGTGATGCTTTTAATGAGGGTCTCTATGAAGAGCAGGCACGACTGAGGGGTATTCCATTACTGGAACCAAGGCCCAAATATGTGATGCGGAACATGACAGCAAGGGAGGCATGTGGCAGTGGAATGGTGGTCTCCTTCCCCCGTGTTGTTAAGGTTGCAGATGTAGTTTCTATTCTTCGGAGCAACAAACACAATGGTTTTCCTGTTATTGATCACACAAGAAGTGGAGAACCACTTGTTATTGGATTAGTACTTCGAAGTCATTTATTGGTAATTCTGCAAACAAAAGTTGATTTCCAGTATAGTCCTTTACCCTCTGATCCCAGAGGTGAAGCAAGGCCAATAAGGCATGACTTTGGCGAATTTGCAAAGCCTGTTTCTAGTAAGGGAATATCTATAGATGATATATTTTTAAGTTCAGATGACTTGGAAATGTACATAGATCTTGCCCCTTTTTTGAATCCATCGCCATACATTGTGCCTGAAGATATGTCGTTGACAAAGGTTTACAATCTTTTCCGCCAATTAGGGTTGAGGCATTTATTTGTTGTTCCACGTCCATCTCGTGTACTTGGCTTGATAACCAGAAAAGACTTGTTGATTGAGGACGCTGAAACTGTGAATGCGGTAGAGCTCCAATCAACTAGAGTAAGAATGCAGAATCGTGATAAAAAATTGATGACCAGGAATGCAGATGCTGAGCGGCCTTTGTTAAATGGCCTACTGGTTCAGGATCAAATTTCTGGCTAG 2397 0.4209 MLSNHFQNGIETAKLVWSRIPNSEDLQYLDDAVSLLKKSDGSGVESLDYEVIENCAYREEQAQRGKLYVSYLLVVKWFFALLIGIGTGLAAVFINISVENFAGWKYSLTFNIIQKSYVAGFIVYVLINLVLVYSSVYIVTQFAPAAAGSGIPEIKGYLNGIDVHGILLFRTLIGKIFGSVGSVGGGLALGKEGPLVHIGACIASLLGQGGSTKYHLSSRWFQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWCKNERCGHFGSGGFIIWDVSDGQEDYSFVELLPMAIIGVIGGLLGALFNQLTLYITSWRRNYLHKKGIRVKIVEACLVSVLTSVISFCLPLLRKCSPCPESDPDCPRPPGMYGNYVNFFCGKEKEYNDLATIFFNTQDDAIRNLFSAKTIHEFSAQSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVRYYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEEQARLRGIPLLEPRPKYVMRNMTAREACGSGMVVSFPRVVKVADVVSILRSNKHNGFPVIDHTRSGEPLVIGLVLRSHLLVILQTKVDFQYSPLPSDPRGEARPIRHDFGEFAKPVSSKGISIDDIFLSSDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEDAETVNAVELQSTRVRMQNRDKKLMTRNADAERPLLNGLLVQDQISG 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0474 798 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 34 754 - -
Prci4g0474 798 Gene3D Clc chloride channel 69 571 - -
Prci4g0474 798 ProSiteProfiles CBS domain profile. 702 759 IPR000644 -
Prci4g0474 798 FunFam Chloride channel protein 694 785 - -
Prci4g0474 798 CDD ClC_6_like 45 570 - -
Prci4g0474 798 SMART cbs_1 705 753 IPR000644 -
Prci4g0474 798 SMART cbs_1 591 643 IPR000644 -
Prci4g0474 798 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci4g0474 798 PRINTS Plant CLC chloride channel signature 418 434 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci4g0474 798 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci4g0474 798 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci4g0474 798 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci4g0474 798 Gene3D - 592 755 IPR046342 -
Prci4g0474 798 SUPERFAMILY CBS-domain pair 575 749 IPR046342 -
Prci4g0474 798 Pfam Voltage gated chloride channel 134 550 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g0474 798 CDD CBS_pair_voltage-gated_CLC_euk_bac 592 749 - -
Prci4g0474 798 FunFam Chloride channel ClC3 68 385 - -
Prci4g0474 798 PRINTS Chloride channel signature 501 517 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g0474 798 PRINTS Chloride channel signature 466 486 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g0474 798 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g0474 798 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g0474 798 PRINTS Chloride channel signature 519 538 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g0474 798 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g0474 798 PRINTS Chloride channel signature 557 571 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g0474 798 Pfam CBS domain 703 750 IPR000644 -
Prci4g0474 798 SUPERFAMILY Clc chloride channel 54 572 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0474 Prci-Chr4 3281574 3291683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0474 1 767 Ion Channels AT5G26240 84.197 0.0 1242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0474 K05016 - gmx:100811908 1360.9